DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment si:ch211-225k7.2 and lectin-22C

DIOPT Version :9

Sequence 1:XP_003198916.1 Gene:si:ch211-225k7.2 / 793018 ZFINID:ZDB-GENE-060503-782 Length:361 Species:Danio rerio
Sequence 2:NP_001137766.1 Gene:lectin-22C / 7354375 FlyBaseID:FBgn0259230 Length:263 Species:Drosophila melanogaster


Alignment Length:115 Identity:29/115 - (25%)
Similarity:51/115 - (44%) Gaps:11/115 - (9%)


- Green bases have known domain annotations that are detailed below.


Zfish    19 ECVQRQYHFINE--KKTWTEAQRYCREKYTDLATVDNMNDTTELMKSV-YDVRLWIGLQ------ 74
            |.:..:|::|.:  :|.|:.|.:.||.....||.:.:..|...:..:: .|...|:|:.      
  Fly   140 EQIGSKYYYIEKVSEKNWSTASKTCRNMGGHLADIKDEADLAAIKANLKEDTHYWLGINDLDHEG 204

Zfish    75 RKWQWSSGGPALFLNWGYNQPDGSD--ECAFMKNGVWHDGKCSDTWIFVC 122
            :.....:|....||.|...:|...|  .|.|:.||..:|..|..|:.|:|
  Fly   205 KFLSMPTGKQTTFLKWASGRPSQLDTLNCVFLYNGEMYDYPCHYTFRFIC 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:ch211-225k7.2XP_003198916.1 CLECT 23..124 CDD:295302 28/111 (25%)
CLECT_1 127..239 CDD:153072
CLECT 245..359 CDD:153057
lectin-22CNP_001137766.1 CLECT 146..255 CDD:153057 28/109 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X29
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.