DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf150b and gol

DIOPT Version :9

Sequence 1:NP_001017554.1 Gene:rnf150b / 792211 ZFINID:ZDB-GENE-050417-470 Length:419 Species:Danio rerio
Sequence 2:NP_001163300.1 Gene:gol / 38006 FlyBaseID:FBgn0004919 Length:601 Species:Drosophila melanogaster


Alignment Length:350 Identity:135/350 - (38%)
Similarity:198/350 - (56%) Gaps:33/350 - (9%)


- Green bases have known domain annotations that are detailed below.


Zfish    42 AFVNITYVDPDTAEVRTE-KTECGRYGEHSLKREARGVLAMPAAPH--DRHACDPSGRFT----- 98
            ||:|.:||:........| ..|..||||..:......::.:.|..:  |.:||.|..|.|     
  Fly    70 AFLNWSYVEHGNMLCNMEFAQEQARYGEGKVLNVTGRLIHITATDNFSDDYACTPYIRGTLGAPI 134

Zfish    99 PRAHGAWIALISRGNCTYKDKIRHAVGHNASAVVIFNVGSSNPNETITMPHQGIS----DVVAIM 159
            |.....||||:.||.||:::|::|....||:.|:|:     |..:.:.:....|.    ::.|::
  Fly   135 PDKGETWIALVRRGRCTFEEKVKHVYQQNAAGVIIY-----NDKQVMQLEKMQIKGKTRNIAAVI 194

Zfish   160 IPEPKGRELVLLMERNITVHMHITIGTRNLQ--KYVSRTSVVFVSISFIILMIISLAWLVFYYIQ 222
            ..:..|::|.|.:::...|.:.|..|.|.::  ..::||||:|||||||:||||||.||:|||||
  Fly   195 TYQNIGQDLSLTLDKGYNVTISIIEGRRGVRTISSLNRTSVLFVSISFIVLMIISLVWLIFYYIQ 259

Zfish   223 RFRYANARDRNQRRLGDAAKKAISQLQVRTIRKGDQETESDFDNCAVCIEGYKPNDVVRILPCRH 287
            ||||..|:|:..|.|....||||.::..:|.:..| |.:.|.|.||:|||.|||.|.:|||||:|
  Fly   260 RFRYMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSD-EKDLDSDCCAICIEAYKPTDTIRILPCKH 323

Zfish   288 LFHKCCVDPWLVDHRTCPMCKMNILKALG--LTSSAECLNELPLDYELAVGGVALNAMVMSDDVM 350
            .|||.|:||||::||||||||:::||..|  ...|.|.:.|...|....:      |:|.:.|..
  Fly   324 EFHKNCIDPWLIEHRTCPMCKLDVLKFYGYVFLGSEESILEYQPDPPQGL------ALVEARDES 382

Zfish   351 AGDVGGARDPGVRMGGLPQV-LLDS 374
            | |:..:||..|   ..|:| :|||
  Fly   383 A-DLNRSRDFVV---DFPRVFVLDS 403

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
rnf150bNP_001017554.1 PA_GRAIL_like 45..182 CDD:239037 38/148 (26%)
UPF0233 <196..>221 CDD:299753 20/24 (83%)
zf-RING_2 265..308 CDD:290367 30/42 (71%)