DRSC/TRiP Functional Genomics Resources

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Protein Alignment DDX39B and Gem3

DIOPT Version :10

Sequence 1:NP_004631.1 Gene:DDX39B / 7919 HGNCID:13917 Length:428 Species:Homo sapiens
Sequence 2:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:414 Identity:123/414 - (29%)
Similarity:206/414 - (49%) Gaps:21/414 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    14 EDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ 78
            |.:...:.|||:    ....||....|..    |.:..|...||..:....|..|:::|...||.
  Fly     2 EREIAHSLAGGE----ERSSDVAPGQVKT----FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPM 58

Human    79 AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 143
            |:..||::.|:|||.|||.::|:|.:|...|...|...:::..|||||.|:...:....|...:.
  Fly    59 ALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDF 123

Human   144 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR 208
            |.:.|.||..:.||.:  :.|...:::|||||:|.|..|:..::..::..:|||.|::.:...::
  Fly   124 KCSAFIGGTDVAKDRK--RMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQ 186

Human   209 RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE 273
            ..|.::....|..:|::..|||..:.:.....|.|..|| :..:.|....|.|::|:..:|....
  Fly   187 HTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPM-LISNSERATVLLGIRQFVYELPQQN 250

Human   274 --------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 330
                    |.:.|..:.:.|.:.|.:||..|..|..:....|.........|...|.|.|||..:
  Fly   251 NSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVF 315

Human   331 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395
            :.:::|..||||||:|..||:|....|:..|.|.|:|..|||||:.||||||:||:||||::.:.
  Fly   316 EGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKK 380

Human   396 DAKILNDVQDRFEV--NISELPDE 417
            :::...::..:...  ::.|.|.|
  Fly   381 ESQRFREMSKKIATAWSVLEFPKE 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DDX39BNP_004631.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 4/16 (25%)
DEADc_DDX39 44..251 CDD:350708 60/206 (29%)
Q motif 45..73 6/27 (22%)
DECD box 196..199 2/2 (100%)
SF2_C_DEAD 262..391 CDD:350174 49/136 (36%)
Gem3NP_524019.1 SrmB 26..409 CDD:440279 116/386 (30%)

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