DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX8 and hbn

DIOPT Version :10

Sequence 1:NP_003457.1 Gene:PAX8 / 7849 HGNCID:8622 Length:450 Species:Homo sapiens
Sequence 2:NP_788420.1 Gene:hbn / 47894 FlyBaseID:FBgn0008636 Length:409 Species:Drosophila melanogaster


Alignment Length:329 Identity:67/329 - (20%)
Similarity:116/329 - (35%) Gaps:100/329 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   157 HTLIPSSAVTPP--ESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDS------- 212
            |.::|.:....|  |||.|.. .:.|||:.:||      ::.::..||..|..|....       
  Fly    13 HPIMPPAMRPAPVQESPVSRP-RAVYSIDQILG------NQHQIKRSDTPSEVLITHPHHGHPHH 70

Human   213 ----QSSSSGPRKHL-----RTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLN 268
                .||:|....||     :..:..|||.:..:...:.|...:...||::|.|...:.....|:
  Fly    71 IHHLHSSNSNGSNHLSHQQQQQHSQQQHHSQQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELS 135

Human   269 STLDDGKATLTPSNTP--LGRNLSTHQTYPVVADPHS---PFAIKQETPEVSSSSSTPSSLSSS- 327
            |:|::|. .|:....|  :.|:.:|..|:.:    |.   .|. |.:.|:|.:.......|..| 
  Fly   136 SSLNNGH-DLSDMERPRKVRRSRTTFTTFQL----HQLERAFE-KTQYPDVFTREDLAMRLDLSE 194

Human   328 ------------------AFLDLQQVG-----SGVPPF--------NAFP-HAASVYGQFTGQAL 360
                              .|::..:.|     .|:|.|        :..| |..|:..:|     
  Fly   195 ARVQVWFQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSMQSEF----- 254

Human   361 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLL 425
                         :|||.......:.|::|.||::             |....:..::.||...|
  Fly   255 -------------WPPHFALHQHFNPAAAAAAGLL-------------PQHLMAPHYKLPNFHTL 293

Human   426 SSPY 429
            .|.|
  Fly   294 LSQY 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX8NP_003457.1 PAX 9..133 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..222 18/75 (24%)
Pax2_C 337..449 CDD:463563 20/102 (20%)
hbnNP_788420.1 Homeodomain 154..210 CDD:459649 10/60 (17%)
Blue background indicates that the domain is not in the aligned region.

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