DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX8 and gsb

DIOPT Version :10

Sequence 1:NP_003457.1 Gene:PAX8 / 7849 HGNCID:8622 Length:450 Species:Homo sapiens
Sequence 2:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster


Alignment Length:34 Identity:10/34 - (29%)
Similarity:14/34 - (41%) Gaps:5/34 - (14%)


- Green bases have known domain annotations that are detailed below.


Human   136 CSLVYEAPF-----DAQASLYQARCRYLQPRWVD 164
            |::.|....     |...||::.|.|....||.|
  Fly    21 CTIGYHVRLHLKFPDKINSLHRRRHRPRCLRWFD 54

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX8NP_003457.1 PAX 9..133 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..222 3/6 (50%)
Pax2_C 337..449 CDD:463563
gsbNP_523863.1 PAX 19..143 CDD:128645 10/34 (29%)
Homeodomain 186..242 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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