DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX8 and PHDP

DIOPT Version :10

Sequence 1:NP_003457.1 Gene:PAX8 / 7849 HGNCID:8622 Length:450 Species:Homo sapiens
Sequence 2:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster


Alignment Length:129 Identity:36/129 - (27%)
Similarity:54/129 - (41%) Gaps:34/129 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   140 FNLPMDS----CVATK----SLSPGHTLIPSSAVTPPE-SPQSDSLGSTYSINGLLGIAQPGSDK 195
            :||.:||    |....    ||:...:|:.|...|..| .|.:.::|| |:.:..|        |
  Fly    42 YNLMIDSSYKLCANESAIRGSLNQESSLLFSKITTVSEFYPATHNIGS-YNTDFHL--------K 97

Human   196 RKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAY-----ASPSH 254
            ...||.      ||:..:|.    ::.:|| .|:.:.|..||..|...|||:.|     ||..|
  Fly    98 SYGDDG------LSLTDKSK----QRRIRT-TFTSNQLNELEKIFLETHYPDIYTREEIASKLH 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX8NP_003457.1 PAX 9..133 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..222 15/63 (24%)
Pax2_C 337..449 CDD:463563
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 14/39 (36%)
Blue background indicates that the domain is not in the aligned region.

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