DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX8 and prd

DIOPT Version :10

Sequence 1:NP_003457.1 Gene:PAX8 / 7849 HGNCID:8622 Length:450 Species:Homo sapiens
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:100 Identity:24/100 - (24%)
Similarity:33/100 - (33%) Gaps:39/100 - (39%)


- Green bases have known domain annotations that are detailed below.


Human    48 YA--EACGDAAAAARARPGR------------------AALYVGLLGGAAACCALAPSEAAFEEA 92
            ||  ||..:.|.|...||..                  |.|:.|..|||..            |:
  Fly   630 YATTEAVPERATATSVRPSAPSPSSSSSSVPITLEDIDAELHRGSNGGAMV------------ES 682

Human    93 LLDASGSLLLLAPATRNRHSEAFLQRLLWLRGRGR 127
            ...:||| ..:.||:      ..:..::.||..||
  Fly   683 SSPSSGS-STMGPAS------PMMDMMMMLRPEGR 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX8NP_003457.1 PAX 9..133 CDD:128645 23/99 (23%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 9/39 (23%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 9/40 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..222
Pax2_C 337..449 CDD:463563
prdNP_723721.1 PAX 27..154 CDD:238076
Homeodomain 214..270 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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