DRSC/TRiP Functional Genomics Resources

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Protein Alignment LRP8 and CG6553

DIOPT Version :10

Sequence 1:NP_004622.2 Gene:LRP8 / 7804 HGNCID:6700 Length:963 Species:Homo sapiens
Sequence 2:NP_610911.1 Gene:CG6553 / 36537 FlyBaseID:FBgn0033880 Length:319 Species:Drosophila melanogaster


Alignment Length:230 Identity:57/230 - (24%)
Similarity:72/230 - (31%) Gaps:99/230 - (43%)


- Green bases have known domain annotations that are detailed below.


Human    72 CLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQVCPAEKLSCGP 136
            ||...:...|..:        |..|.||.....|||...|.|||||:.|.|.|..||.       
  Fly    23 CLGSQNATSCGHR--------CGGGDCIQLDQLCDGSANCLDGSDETVAMCEKVWCPG------- 72

Human   137 TSHKCVPASWRCDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDGSDERGC 201
                                             :.|:|...:|:|:..||||..||.|||||:| 
  Fly    73 ---------------------------------YAFRCSYGACIASTAVCDGVQDCVDGSDEQG- 103

Human   202 ADPACGPREFRCGGDGGGACIPERWVCDRQFDCEDRSDEAAELCGRPGPGATSAPAACATASQFA 266
                                    |:|..|..                      .|.|.....: 
  Fly   104 ------------------------WLCRAQMQ----------------------QANCDNWEMY- 121

Human   267 CRSGECVHLGWRCDGDRDCKDKSDEADCPLGTCRG 301
            |.||:|:.....|||.|||:|..||.:   ..|.|
  Fly   122 CSSGQCMTYSKLCDGIRDCRDGDDELE---SLCEG 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRP8NP_004622.2 LDLa 47..81 CDD:238060 2/8 (25%)
LDLa 85..117 CDD:197566 11/31 (35%)
LDLa 127..163 CDD:238060 2/35 (6%)
LDLa 206..240 CDD:197566 3/33 (9%)
Ldl_recept_a 262..294 CDD:395011 13/31 (42%)
Ldl_recept_a 298..333 CDD:395011 2/4 (50%)
FXa_inhibition 340..374 CDD:464251
EGF_CA 376..406 CDD:214542
LY 445..480 CDD:214531
LDL-receptor class B 1 462..508
LY 489..531 CDD:214531
LDL-receptor class B 2 509..551
LDL-receptor class B 3 552..595
Ldl_recept_b 552..592 CDD:459654
LY 576..618 CDD:214531
LDL-receptor class B 4 596..639
Ldl_recept_b 639..679 CDD:459654
LDL-receptor class B 5 640..681
FXa_inhibition 697..734 CDD:464251
Clustered O-linked oligosaccharides 740..798
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 754..815
CG6553NP_610911.1 LDLa 34..60 CDD:197566 11/33 (33%)
LDLa 70..101 CDD:197566 15/70 (21%)
LDLa 115..146 CDD:197566 12/31 (39%)
Blue background indicates that the domain is not in the aligned region.

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