DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment opcml and DIP-epsilon

DIOPT Version :9

Sequence 1:NP_001072487.1 Gene:opcml / 779942 XenbaseID:XB-GENE-5831850 Length:346 Species:Xenopus tropicalis
Sequence 2:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster


Alignment Length:332 Identity:101/332 - (30%)
Similarity:151/332 - (45%) Gaps:36/332 - (10%)


- Green bases have known domain annotations that are detailed below.


 Frog    33 VRSGDAGFPKAMDNVTVRQGDSAILRCTVDNRVT-RVAWLN--RSTILYTGNDKWSIDPRVVLLA 94
            |.|.|..|...::|:||..|.:..|.|:|.|..: :|||::  :|.||...|...:.:||:.:..
  Fly    47 VISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPRISVTH 111

 Frog    95 NTKSQYS---IEIQNVDIYDEGPYTCSVQTDNHPKTSRVHLIVQVAPQILN--ISSDITVNEGST 154
            :...::.   :.|.||...|.|.|.|.:.|.. .||....:.|.|.|.|.:  .||||.|.||..
  Fly   112 DKHDKHRTWFLHINNVQEEDRGRYMCQINTVT-AKTQYGFVKVVVPPNIDDALTSSDIIVREGDN 175

 Frog   155 VALRCLATGRPEPAVTWRHFTGKS---------HRFVSDDEYLEITGITRDQSGQYECSAANDVS 210
            |.|||.|.|.|||.:.|:...|..         |...:|.  ||:..|:|...|.|.|.|:|.|.
  Fly   176 VTLRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDS--LELERISRLHMGAYLCIASNGVP 238

 Frog   211 APDIRKVRVTVNYPPYI-SDTRNTGASLGQKGILRCSASAVPLAEFQWYREETRLANGLDGVRIE 274
            ....::::|:|::.|.: ...:..|..:|....|.|...|.|.:...|.||..::.......:.|
  Fly   239 PSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKTE 303

 Frog   275 N-KDHMSI-----LTFFNVSEKDYGNYTCVASNKLGNSNASVILY-AGPGAIH--------NRSS 324
            . ..|.|.     ||..||...|||||.|||.|..|:.:.::.|| :.|....        .|::
  Fly   304 TIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLYMSSPPTTQPPPTTTTLRRTT 368

 Frog   325 SASAAIA 331
            :.:|.||
  Fly   369 TTAAEIA 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
opcmlNP_001072487.1 Ig 46..134 CDD:325142 27/93 (29%)
Ig_3 138..207 CDD:316449 30/79 (38%)
ig 228..312 CDD:278476 26/89 (29%)
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 28/96 (29%)
Ig 69..139 CDD:143165 20/69 (29%)
IG_like 165..249 CDD:214653 31/85 (36%)
IGc2 172..237 CDD:197706 24/66 (36%)
IG_like 267..348 CDD:214653 25/80 (31%)
Ig 270..339 CDD:299845 23/68 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 58 1.000 Domainoid score I10578
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I4412
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.060

Return to query results.
Submit another query.