DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rnf145 and PEX10

DIOPT Version :9

Sequence 1:NP_001072260.1 Gene:rnf145 / 779713 XenbaseID:XB-GENE-979193 Length:695 Species:Xenopus tropicalis
Sequence 2:NP_010551.1 Gene:PEX10 / 851858 SGDID:S000002673 Length:337 Species:Saccharomyces cerevisiae


Alignment Length:326 Identity:65/326 - (19%)
Similarity:118/326 - (36%) Gaps:114/326 - (34%)


- Green bases have known domain annotations that are detailed below.


 Frog   329 GLIELQVVHRAFLLSIILFI----VVASILQSMLEIADPIVLALGASRDKSLWKHF--------R 381
            ||:.::|.....|:...||:    ...||...:|     .:|.....|.::|.:.:        :
Yeast    40 GLLIMKVTELCKLIKSQLFVNSYPKELSIFAKLL-----YLLFTTGRRGRTLGEEYVDLTYTNRK 99

 Frog   382 AVSLC--LFLLVFPSYMAYMICQFFHMDFWLLIIISSSILTSLQVLGTLFIYVLFMIEEFRKEPV 444
            ...|.  |.::||.  .||.:|.:|              :|.|        |...| :..::..:
Yeast   100 GTRLAGRLKMIVFA--FAYPLCPYF--------------ITKL--------YKKIM-KNNKESKI 139

 Frog   445 ENMDDVIYYVNGTYRLLEFLVALCVVA-------YGVSETVFG---------------------- 480
            |:.:.|..:..|   ||:|::.:.:..       |.:|:.:||                      
Yeast   140 EDTESVAAFCKG---LLDFILDVHMTLFYFKGAFYSISKRIFGMRYVFKHILSKNEANFREEGSQ 201

 Frog   481 EWTVMGSMIIF--IHSYYNV-------WL-----------RAQLGWKSFLLRRDAVNKIKSLP-- 523
            ::.|:|.:::.  :..:|.|       |:           |:.:|    |..|.....|:.:|  
Yeast   202 KYKVLGYILLAQNVMKWYPVLTSTLGSWIYGRKRTNDSITRSSVG----LQERSEHESIEGIPKE 262

 Frog   524 -------VATKEQL---EQHNDICSICYQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC--HC 576
                   ::.|.||   .:.:..|.:|..:|:.....||.|.|...||..|...:..||||  ||
Yeast   263 SQLTHINLSDKNQLPFIPEASRKCILCLMNMSDPSCAPCGHLFCWSCLMSWCKERPECPLCRQHC 327

 Frog   577 Q 577
            |
Yeast   328 Q 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf145NP_001072260.1 TRC8_N 8..506 CDD:372682 40/239 (17%)
RING-H2_RNF145 533..575 CDD:319598 14/43 (33%)
rad18 537..>651 CDD:273165 17/43 (40%)
RING-H2 finger (C3H2C3-type) 537..574 CDD:319598 12/36 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 585..610
PEX10NP_010551.1 PEX10 5..337 CDD:227861 65/326 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.