DRSC/TRiP Functional Genomics Resources

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Protein Alignment si:ch211-137a8.2 and Msp300

DIOPT Version :9

Sequence 1:NP_001315020.1 Gene:si:ch211-137a8.2 / 777613 ZFINID:ZDB-GENE-061103-172 Length:632 Species:Danio rerio
Sequence 2:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster


Alignment Length:569 Identity:118/569 - (20%)
Similarity:204/569 - (35%) Gaps:128/569 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    42 YLQSSETCCPTTSSKPYDDDDDDLNEFSNEWLSIGDL------SPDVSFSLEGCVKLEKRWML-- 98
            |:.|.::..|..  |...:.|.:| |...:..::|||      :.|...|:| .|.||:..:|  
  Fly   159 YVTSVKSIKPIV--KHLSEMDKEL-EHIGQVTTVGDLKDKLQEAEDAKISVE-AVLLERNSLLQE 219

Zfish    99 ----WHEFKKDLSSMDEWLRSAEKIAASPNSSHVLYKTAKDELRKYENLRAEARMRLTQLDCLTQ 159
                |.:.::.:..:..|   .||.....:||....|..:|:|...|...|:..::.|:|. |:.
  Fly   220 ACEEWDQCERKIKDIRSW---HEKTKQGLDSSQQQKKPLRDQLGFCEKTLADINVQKTKLR-LSI 280

Zfish   160 RSRALHGLFRGAMGA--RLVEMTKDCGERWDQLSNTLETVCRRLKHLVGQREDFERQREEM--AV 220
            ....:|  ||..||.  ||.|...|.....|.|...::...:.|:..:.|.:.:::|.:.:  .:
  Fly   281 EKLEVH--FRNGMGGDPRLSENVDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRI 343

Zfish   221 WLADMDLRLTEVEHFSGKDTCSKMHQLQGFQEAVGESAGRLNDLLQRGEELIQRSEPADAQAI-- 283
            ...:..|||.....:...|....:.:.|..:|::       :.:.|..:...::|...|..::  
  Fly   344 IQEEQQLRLVMAPTYLPHDRERALAEQQAMRESI-------DGMQQVYDATARKSYALDPHSVVT 401

Zfish   284 ESQLQELLLHCTHVFQALGRLHTRLLSMRLVFEEDWALCSP-DSGCPSESLL-----EDEGFMEK 342
            .|....||:..|   .|:|..:..:||         ...|| .||  :||:.     .|......
  Fly   402 TSSTVSLLMKPT---AAVGLTYAEVLS---------GQASPVSSG--NESVTNSRPERDPSTTTT 452

Zfish   343 IMAPFPQSSHD-------QLVLEWDPSVDIGGSISHDDTDSSSFSAAAGVFSTDESAKNPLRKRV 400
            ......|.|:|       ..:.....:.....|...||..|.......|..||..:|.       
  Fly   453 TTTTRQQQSNDTQNTTTITTIKTTTTTTTTSRSTHGDDDQSQERQELNGGGSTTATAN------- 510

Zfish   401 CIKQPGHEKSLDRAAPP----QTPVPVIRAGRPQFAGQFQTSTPEIRSPELLTFDPERISAWLGQ 461
             .|:|      .:..||    ...||             .|:|..|.:|.:...:.||    ..|
  Fly   511 -YKRP------QQVTPPSENTSNTVP-------------NTATTTITNPNIQFIESER----RHQ 551

Zfish   462 THQVCTKAIQTEHDPQPRSSFSSLPSGKEDKEEEGFEYQENVHHPPRPTCANLHSSQSCDLQHHL 526
            .|.  .|..:..|.|:|              |..|...:.......:|    :.|||...::  :
  Fly   552 HHH--AKTGKKLHAPRP--------------ERRGRSPRRRPPQQQKP----VESSQQPSIE--I 594

Zfish   527 QQRHQDPQRQQERLCLPDSLEDNSCTKLSRDLCQPKASTGNSWSSRILR 575
            |...|.|| :||:|.||  .:|.:.::      .|....|::..:.:||
  Fly   595 QLERQQPQ-EQEQLFLP--ADDRTRSR------SPMWVPGSTSYAEVLR 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:ch211-137a8.2NP_001315020.1 SPEC 98..308 CDD:238103 44/221 (20%)
KASH <597..632 CDD:287506
Msp300NP_001188695.1 SPEC 17..220 CDD:238103 17/64 (27%)
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705
SMC_prok_B 11614..12442 CDD:274008
SPEC 11994..12156 CDD:295325
SPEC 12374..12564 CDD:295325
Lipase_chap 12376..12529 CDD:281297
SPEC 12703..12923 CDD:238103
SPEC 12816..13032 CDD:295325
SPEC 13196..13374 CDD:238103
KASH 13484..13540 CDD:287506
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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