DRSC/TRiP Functional Genomics Resources

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Protein Alignment si:ch211-137a8.2 and Msp300

DIOPT Version :10

Sequence 1:NP_001315020.1 Gene:si:ch211-137a8.2 / 777613 ZFINID:ZDB-GENE-061103-172 Length:632 Species:Danio rerio
Sequence 2:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster


Alignment Length:569 Identity:118/569 - (20%)
Similarity:204/569 - (35%) Gaps:128/569 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    42 YLQSSETCCPTTSSKPYDDDDDDLNEFSNEWLSIGDL------SPDVSFSLEGCVKLEKRWML-- 98
            |:.|.::..|..  |...:.|.:| |...:..::|||      :.|...|:| .|.||:..:|  
  Fly   159 YVTSVKSIKPIV--KHLSEMDKEL-EHIGQVTTVGDLKDKLQEAEDAKISVE-AVLLERNSLLQE 219

Zfish    99 ----WHEFKKDLSSMDEWLRSAEKIAASPNSSHVLYKTAKDELRKYENLRAEARMRLTQLDCLTQ 159
                |.:.::.:..:..|   .||.....:||....|..:|:|...|...|:..::.|:|. |:.
  Fly   220 ACEEWDQCERKIKDIRSW---HEKTKQGLDSSQQQKKPLRDQLGFCEKTLADINVQKTKLR-LSI 280

Zfish   160 RSRALHGLFRGAMGA--RLVEMTKDCGERWDQLSNTLETVCRRLKHLVGQREDFERQREEM--AV 220
            ....:|  ||..||.  ||.|...|.....|.|...::...:.|:..:.|.:.:::|.:.:  .:
  Fly   281 EKLEVH--FRNGMGGDPRLSENVDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRI 343

Zfish   221 WLADMDLRLTEVEHFSGKDTCSKMHQLQGFQEAVGESAGRLNDLLQRGEELIQRSEPADAQAI-- 283
            ...:..|||.....:...|....:.:.|..:|::       :.:.|..:...::|...|..::  
  Fly   344 IQEEQQLRLVMAPTYLPHDRERALAEQQAMRESI-------DGMQQVYDATARKSYALDPHSVVT 401

Zfish   284 ESQLQELLLHCTHVFQALGRLHTRLLSMRLVFEEDWALCSP-DSGCPSESLL-----EDEGFMEK 342
            .|....||:..|   .|:|..:..:||         ...|| .||  :||:.     .|......
  Fly   402 TSSTVSLLMKPT---AAVGLTYAEVLS---------GQASPVSSG--NESVTNSRPERDPSTTTT 452

Zfish   343 IMAPFPQSSHD-------QLVLEWDPSVDIGGSISHDDTDSSSFSAAAGVFSTDESAKNPLRKRV 400
            ......|.|:|       ..:.....:.....|...||..|.......|..||..:|.       
  Fly   453 TTTTRQQQSNDTQNTTTITTIKTTTTTTTTSRSTHGDDDQSQERQELNGGGSTTATAN------- 510

Zfish   401 CIKQPGHEKSLDRAAPP----QTPVPVIRAGRPQFAGQFQTSTPEIRSPELLTFDPERISAWLGQ 461
             .|:|      .:..||    ...||             .|:|..|.:|.:...:.||    ..|
  Fly   511 -YKRP------QQVTPPSENTSNTVP-------------NTATTTITNPNIQFIESER----RHQ 551

Zfish   462 THQVCTKAIQTEHDPQPRSSFSSLPSGKEDKEEEGFEYQENVHHPPRPTCANLHSSQSCDLQHHL 526
            .|.  .|..:..|.|:|              |..|...:.......:|    :.|||...::  :
  Fly   552 HHH--AKTGKKLHAPRP--------------ERRGRSPRRRPPQQQKP----VESSQQPSIE--I 594

Zfish   527 QQRHQDPQRQQERLCLPDSLEDNSCTKLSRDLCQPKASTGNSWSSRILR 575
            |...|.|| :||:|.||  .:|.:.::      .|....|::..:.:||
  Fly   595 QLERQQPQ-EQEQLFLP--ADDRTRSR------SPMWVPGSTSYAEVLR 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:ch211-137a8.2NP_001315020.1 SPEC 98..308 CDD:238103 44/221 (20%)
KASH <597..632 CDD:463142
Msp300NP_001188695.1 SPEC 17..220 CDD:238103 17/64 (27%)
EnvC 194..>393 CDD:443969 43/212 (20%)
PTZ00121 <1704..1881 CDD:173412
SPEC 9546..9732 CDD:413338
rne <10668..10827 CDD:236766
SMC_prok_B 11268..12195 CDD:274008
YhaN 11930..12426 CDD:443752
SMC_prok_B <12205..12954 CDD:274008
YhaN 12817..>13241 CDD:443752
SPEC 13196..13374 CDD:238103
KASH 13484..13540 CDD:463142
Blue background indicates that the domain is not in the aligned region.

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