DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrmda and CG31076

DIOPT Version :9

Sequence 1:XP_006519739.1 Gene:Lrmda / 76633 MGIID:1923883 Length:239 Species:Mus musculus
Sequence 2:NP_733184.2 Gene:CG31076 / 318582 FlyBaseID:FBgn0051076 Length:182 Species:Drosophila melanogaster


Alignment Length:161 Identity:57/161 - (35%)
Similarity:84/161 - (52%) Gaps:14/161 - (8%)


- Green bases have known domain annotations that are detailed below.


Mouse     9 TQVSYVGQSCREIPEHLGRDFGHFAKRLDLSFNLLRSLEGLSAFRSLEELILDNNLLGD----DL 69
            :|:..|.|:.|.:|:.|.:......::||||.|.|:.|..|:.|..|..|:||:|.:.:    .|
  Fly     9 SQLILVQQNLRTLPQELVKKHADHVEQLDLSHNCLKDLSWLADFEQLRHLVLDSNRMHEAHLRTL 73

Mouse    70 VLPGLPHLHTLTLNKNQITDLEYLLDHLAEVTPSLEYLSLLGNVACPNELVNLEKD------EED 128
            ..| ||.|..|.||||:.:||...:..:.:..|:|:||||.||..||:   .||..      ..|
  Fly    74 TCP-LPQLEVLMLNKNEFSDLPTTMRLIRKFFPNLQYLSLHGNPICPD---GLELQPFSTYLRYD 134

Mouse   129 YKRYRCFVLHKLPKLKFLDAQKVTRQEREEA 159
            |:.|..::...|.||||||...|.|..:.|:
  Fly   135 YEYYSNYIAQSLSKLKFLDHGLVQRTYKYES 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LrmdaXP_006519739.1 LRR_9 21..159 CDD:373143 52/147 (35%)
leucine-rich repeat 34..54 CDD:275378 9/19 (47%)
leucine-rich repeat 55..76 CDD:275378 8/24 (33%)
leucine-rich repeat 77..103 CDD:275378 8/25 (32%)
leucine-rich repeat 104..142 CDD:275378 15/43 (35%)
CG31076NP_733184.2 LRR_8 11..65 CDD:290566 19/53 (36%)
leucine-rich repeat 11..32 CDD:275378 5/20 (25%)
leucine-rich repeat 33..54 CDD:275378 9/20 (45%)
leucine-rich repeat 55..79 CDD:275378 8/24 (33%)
leucine-rich repeat 80..106 CDD:275378 8/25 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 86 1.000 Inparanoid score I5155
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55867
OrthoDB 1 1.010 - - D1133053at2759
OrthoFinder 1 1.000 - - FOG0008175
OrthoInspector 1 1.000 - - oto93997
orthoMCL 1 0.900 - - OOG6_106345
Panther 1 1.100 - - LDO PTHR46282
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5168
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.970

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