DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpsm2 and pins

DIOPT Version :10

Sequence 1:NP_083798.2 Gene:Gpsm2 / 76123 MGIID:1923373 Length:679 Species:Mus musculus
Sequence 2:NP_524999.2 Gene:pins / 53569 FlyBaseID:FBgn0040080 Length:658 Species:Drosophila melanogaster


Alignment Length:35 Identity:13/35 - (37%)
Similarity:16/35 - (45%) Gaps:1/35 - (2%)


- Green bases have known domain annotations that are detailed below.


Mouse    69 IIRRVPAAGLKSSNRRFVGHQAGPSAKSSQTGDSS 103
            :.||.....|...||.|:.| |..||:..||...|
  Fly   401 LCRRQTVDELSEFNRAFLRH-ATSSARFFQTPKKS 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpsm2NP_083798.2 Important for interaction with NUMA1, INSC and FRMPD1. /evidence=ECO:0000269|PubMed:21816348, ECO:0000269|PubMed:23318951 22..357 13/35 (37%)
TPR repeat 27..52 CDD:276809
TPR repeat 64..90 CDD:276809 7/20 (35%)
TPR 65..335 CDD:440225 13/35 (37%)
TPR repeat 101..131 CDD:276809 1/3 (33%)
TPR repeat 203..230 CDD:276809
TPR repeat 243..270 CDD:276809
TPR repeat 281..311 CDD:276809
TPR repeat 322..350 CDD:276809
TPR_7 324..359 CDD:433012
GoLoco 490..512 CDD:214645
GoLoco 544..565 CDD:460481
GoLoco 594..616 CDD:214645
GoLoco 629..650 CDD:460481
pinsNP_524999.2 TPR 50..261 CDD:440225
TPR repeat 83..109 CDD:276809
TPR repeat 120..150 CDD:276809
TPR 162..>373 CDD:440225
TPR repeat 162..199 CDD:276809
TPR repeat 219..246 CDD:276809
TPR repeat 251..291 CDD:276809
TPR repeat 296..326 CDD:276809
TPR repeat 338..366 CDD:276809
GoLoco 468..488 CDD:460481
GoLoco 552..573 CDD:460481
GoLoco 613..633 CDD:460481
Blue background indicates that the domain is not in the aligned region.

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