DRSC/TRiP Functional Genomics Resources

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Protein Alignment ZNF18 and znf1069

DIOPT Version :9

Sequence 1:NP_001290210.1 Gene:ZNF18 / 7566 HGNCID:12969 Length:549 Species:Homo sapiens
Sequence 2:NP_001103337.1 Gene:znf1069 / 100126141 ZFINID:ZDB-GENE-071004-89 Length:363 Species:Danio rerio


Alignment Length:283 Identity:89/283 - (31%)
Similarity:124/283 - (43%) Gaps:82/283 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   338 GEGENLPEALQNIQDEGTGEQLSPQER---------------ISEKQLGQHLPNPHSGEMSTMWL 387
            ||.|::     .|::..|.:|...||:               :.|||..:...:..:.|..|:  
Zfish     6 GESEDV-----KIEETFTVKQEDLQEQTDLMVLKEETHQLNVMEEKQQFEKHQDITTDEKPTL-- 63

Human   388 EEKRETSQKGQP--------------RAPMAQKLP---------------TCRECGKTFYRNSQL 423
              .::||.:|:|              |...:|| |               ||.:|||:|.:....
Zfish    64 --TKKTSSRGRPRKSKSGCNFSCTRCRKSFSQK-PKLDVHIRVHTGGKPYTCEQCGKSFSQKQSF 125

Human   424 IFHQRTHTGETYFQCTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTG 488
            ..|.|.||||..:.|..|.|:|..:.:|..|:|.||||:...|..|||.|.:...|..|.:||||
Zfish   126 KTHMRIHTGERPYTCQQCGKSFNHAGNFAAHKRIHTGERKYTCQQCGKSFYNTGNLAVHMRIHTG 190

Human   489 EKPYK----------------------------CPICEKSFIQRSNFNRHQRVHTGEKPYKCSHC 525
            |:||.                            |..|.|||.|:.:...|.|:|||||||||:.|
Zfish   191 EEPYSCSQCGNSFKQNVTLKIHMRTHTGERRFTCTQCGKSFSQKQDLGIHMRIHTGEKPYKCTEC 255

Human   526 GKSFSWSSSLDKHQRSHLGKKPF 548
            ||||.:.|:|..|..||.|:|||
Zfish   256 GKSFPYKSTLKHHMISHTGEKPF 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZNF18NP_001290210.1 SCAN 37..148 CDD:322011
KRAB <222..249 CDD:307490
C2H2 Zn finger 410..430 CDD:275368 7/19 (37%)
COG5048 <436..549 CDD:227381 56/141 (40%)
C2H2 Zn finger 438..458 CDD:275368 7/19 (37%)
C2H2 Zn finger 466..486 CDD:275368 7/19 (37%)
zf-H2C2_2 479..503 CDD:316026 14/51 (27%)
C2H2 Zn finger 494..514 CDD:275368 8/19 (42%)
zf-H2C2_2 506..530 CDD:316026 15/23 (65%)
C2H2 Zn finger 522..542 CDD:275368 9/19 (47%)
znf1069NP_001103337.1 C2H2 Zn finger 84..104 CDD:275368 4/20 (20%)
COG5048 <88..329 CDD:227381 72/192 (38%)
zf-H2C2_2 97..121 CDD:290200 6/23 (26%)
C2H2 Zn finger 112..132 CDD:275368 7/19 (37%)
zf-H2C2_2 124..149 CDD:290200 10/24 (42%)
C2H2 Zn finger 140..160 CDD:275368 7/19 (37%)
C2H2 Zn finger 168..188 CDD:275368 7/19 (37%)
zf-H2C2_2 180..205 CDD:290200 9/24 (38%)
C2H2 Zn finger 196..216 CDD:275368 0/19 (0%)
zf-H2C2_2 209..233 CDD:290200 5/23 (22%)
C2H2 Zn finger 224..244 CDD:275368 8/19 (42%)
zf-H2C2_2 236..259 CDD:290200 14/22 (64%)
C2H2 Zn finger 252..272 CDD:275368 9/19 (47%)
zf-H2C2_2 265..289 CDD:290200 8/14 (57%)
C2H2 Zn finger 280..300 CDD:275368
C2H2 Zn finger 308..328 CDD:275368
C2H2 Zn finger 335..355 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I10838
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.960

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