DRSC/TRiP Functional Genomics Resources

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Protein Alignment YY1 and ztf-17

DIOPT Version :10

Sequence 1:NP_003394.1 Gene:YY1 / 7528 HGNCID:12856 Length:414 Species:Homo sapiens
Sequence 2:NP_495656.2 Gene:ztf-17 / 174269 WormBaseID:WBGene00011639 Length:705 Species:Caenorhabditis elegans


Alignment Length:192 Identity:43/192 - (22%)
Similarity:71/192 - (36%) Gaps:36/192 - (18%)


- Green bases have known domain annotations that are detailed below.


Human   235 ETVVEEQIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTI--- 296
            |.|.||::..|.:.....| :||........|..:..||...:....::|....:..:...:   
 Worm   198 EVVFEEELDDEIADLGADE-LTGDGFNADKSPKSESPDPYLKSSGPLVQPCMTSKSPSYNLLQRN 261

Human   297 -------ACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 354
                   |||.:.|.....:..:|:||:..|||:..|      .:.::.:..:.|||....|..:
 Worm   262 RLQTSRFACPQQDCFWRGTNEMSMKKHMLVHGPKQPV------IYDKTGEAMKVQLVQPKPKGVK 320

Human   355 C----TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI----LTHA 408
            |    ||     .:|....||.....|..:.|.|      .:.||....|:|.:    .|||
 Worm   321 CSECDTF-----AYSRPLLLRHMYDSHGIEAPLV------KRTFANREMLQSWLDSLRETHA 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YY1NP_003394.1 Interaction with the SMAD1/SMAD4 complex. /evidence=ECO:0000269|PubMed:15329343 1..170
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 33..81
Gly-rich region involved in interaction with HCFC1. /evidence=ECO:0000269|PubMed:20805357 116..260 8/24 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 157..203
Involved in nuclear matrix association. /evidence=ECO:0000269|PubMed:9493912 257..341 16/93 (17%)
COG5048 <268..407 CDD:227381 31/156 (20%)
Binding to DNA. /evidence=ECO:0000269|PubMed:18950698 295..414 31/132 (23%)
C2H2 Zn finger 298..320 CDD:275368 6/21 (29%)
C2H2 Zn finger 327..347 CDD:275368 2/19 (11%)
Involved in repression of activated transcription 333..371 8/41 (20%)
C2H2 Zn finger 355..377 CDD:275368 6/25 (24%)
Involved in masking transactivation domain 371..397 6/25 (24%)
C2H2 Zn finger 385..407 CDD:275368 4/25 (16%)
ztf-17NP_495656.2 None
Blue background indicates that the domain is not in the aligned region.

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