DRSC/TRiP Functional Genomics Resources

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Protein Alignment VLDLR and ImpE1

DIOPT Version :10

Sequence 1:NP_003374.3 Gene:VLDLR / 7436 HGNCID:12698 Length:873 Species:Homo sapiens
Sequence 2:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster


Alignment Length:296 Identity:85/296 - (28%)
Similarity:112/296 - (37%) Gaps:76/296 - (25%)


- Green bases have known domain annotations that are detailed below.


Human    46 ITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCN-NGQCVPSRWKCDGDPDCEDGSDESPEQCH 109
            ::|...|..|..|            ..|:...||| .|.|           ||..|.:.|     
  Fly  1359 VSLGLACSSDRQC------------QLADPHTVCNRRGVC-----------DCAAGEEGS----- 1395

Human   110 MRTCRIHEISCGAHSTQC----IPVSW--RCDGENDCDSGEDEENCG-----NITCSPDEFTCS- 162
              .|......|...:.||    :.:||  .|||..||:...||| |.     |.||..:.|.|. 
  Fly  1396 --QCSAERTGCSPGTFQCRSSGVCISWFFVCDGRADCNDASDEE-CTHNARLNQTCPTESFRCQR 1457

Human   163 SGRCISRNFVCNGQDDCSDGSDELDC-----APPTCGAHEFQCSTSSCIPISWVCDDDADCSDQS 222
            |||||||..:|:|:..|..|.|||.|     ....|..|.|:|.:..|:|....|:....|.|.|
  Fly  1458 SGRCISRAALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRCGSGECLPEYEYCNAIVSCKDGS 1522

Human   223 DESLEQCGRQ--PVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFEC 285
            ||....||.:  |.:..:...:....|.|       |.:.|         ..||.|        |
  Fly  1523 DEPPHLCGSRALPNLFMRLIEAGGLLGGG-------RREAD---------AYCPHR--------C 1563

Human   286 EDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGP 321
            .:|.|...:..|:|...|.||:||..| :|.:|..|
  Fly  1564 SNGLCRSTAIVCSGRDGCGDGTDEQTC-SVCRCPAP 1598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VLDLRNP_003374.3 LDLa 33..67 CDD:238060 4/20 (20%)
LDLa 71..103 CDD:197566 9/32 (28%)
Ldl_recept_a 111..149 CDD:395011 14/43 (33%)
LDLa 154..188 CDD:238060 17/34 (50%)
Ldl_recept_a 192..224 CDD:395011 10/31 (32%)
Ldl_recept_a 237..273 CDD:395011 4/35 (11%)
Ldl_recept_a 276..312 CDD:395011 11/35 (31%)
Ldl_recept_a 320..350 CDD:395011 1/2 (50%)
FXa_inhibition 360..394 CDD:464251
EGF_CA 396..426 CDD:214542
Ldl_recept_b 481..522 CDD:459654
LY 505..547 CDD:214531
Ldl_recept_b 568..608 CDD:459654
LY 592..634 CDD:214531
Ldl_recept_b 655..695 CDD:459654
FXa_inhibition 706..749 CDD:464251
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 11/32 (34%)
LDLa 1448..1483 CDD:238060 17/34 (50%)
LDLa 1493..1524 CDD:238060 10/30 (33%)
Blue background indicates that the domain is not in the aligned region.

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