| Sequence 1: | NP_003374.3 | Gene: | VLDLR / 7436 | HGNCID: | 12698 | Length: | 873 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_005155618.1 | Gene: | vldlr / 393897 | ZFINID: | ZDB-GENE-040426-803 | Length: | 877 | Species: | Danio rerio |
| Alignment Length: | 888 | Identity: | 610/888 - (68%) |
|---|---|---|---|
| Similarity: | 714/888 - (80%) | Gaps: | 33/888 - (3%) |
- Green bases have known domain annotations that are detailed below.
|
Human 5 ALWALWLLLALC---WAPRESGATGTGR--KAKCEPSQFQCTNGRCITLLWKCDGDEDCVDGSDE 64
Human 65 KNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIP 129
Human 130 VSWRCDGENDCDSGEDEENCGNITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCG 194
Human 195 AHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCD 259
Human 260 GDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKF 324
Human 325 KCRSGECIDISKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELI 389
Human 390 DRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKI 454
Human 455 GLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIA 519
Human 520 VDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKA 584
Human 585 GMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLA 649
Human 650 LTIFEDRVYWIDGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPSGKNWCEEDMENGG 714
Human 715 CEYLCLPAPQINDHSPKYTCSCPSGYNVEENGRDCQSTAT----------TVTYSETKDTNTTEI 769
Human 770 SA----TSGLVPGGINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSM 830
Human 831 NFDNPVYLKTTEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA 873 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| VLDLR | NP_003374.3 | LDLa | 33..67 | CDD:238060 | 24/33 (73%) |
| LDLa | 71..103 | CDD:197566 | 24/31 (77%) | ||
| Ldl_recept_a | 111..149 | CDD:278486 | 27/37 (73%) | ||
| LDLa | 154..188 | CDD:238060 | 26/33 (79%) | ||
| Ldl_recept_a | 192..224 | CDD:278486 | 17/31 (55%) | ||
| Ldl_recept_a | 237..273 | CDD:278486 | 29/35 (83%) | ||
| Ldl_recept_a | 276..312 | CDD:278486 | 30/35 (86%) | ||
| Ldl_recept_a | 320..350 | CDD:278486 | 19/29 (66%) | ||
| FXa_inhibition | 360..394 | CDD:291342 | 25/33 (76%) | ||
| EGF_CA | 396..426 | CDD:214542 | 24/29 (83%) | ||
| Ldl_recept_b | 481..521 | CDD:278487 | 21/39 (54%) | ||
| LY | 505..547 | CDD:214531 | 24/41 (59%) | ||
| Ldl_recept_b | 568..608 | CDD:278487 | 32/39 (82%) | ||
| LY | 592..634 | CDD:214531 | 33/41 (80%) | ||
| Ldl_recept_b | 655..694 | CDD:278487 | 27/38 (71%) | ||
| FXa_inhibition | 706..749 | CDD:291342 | 27/42 (64%) | ||
| Mucin | <751..813 | CDD:250634 | 24/75 (32%) | ||
| vldlr | XP_005155618.1 | LDLa | 29..63 | CDD:238060 | 24/33 (73%) |
| LDLa | 67..99 | CDD:197566 | 24/31 (77%) | ||
| Ldl_recept_a | 107..145 | CDD:278486 | 27/37 (73%) | ||
| Ldl_recept_a | 149..184 | CDD:278486 | 27/34 (79%) | ||
| Ldl_recept_a | 234..269 | CDD:278486 | 29/34 (85%) | ||
| Ldl_recept_a | 272..308 | CDD:278486 | 30/35 (86%) | ||
| LDLa | 316..346 | CDD:238060 | 19/29 (66%) | ||
| FXa_inhibition | 356..390 | CDD:291342 | 25/33 (76%) | ||
| EGF_CA | 392..426 | CDD:214542 | 28/33 (85%) | ||
| NHL | 479..>570 | CDD:302697 | 58/90 (64%) | ||
| LY | 504..541 | CDD:214531 | 20/36 (56%) | ||
| NHL repeat | 511..551 | CDD:271320 | 25/39 (64%) | ||
| Ldl_recept_b | 564..604 | CDD:278487 | 32/39 (82%) | ||
| LY | 588..630 | CDD:214531 | 33/41 (80%) | ||
| Ldl_recept_b | 651..690 | CDD:278487 | 27/38 (71%) | ||
| FXa_inhibition | 707..745 | CDD:291342 | 24/37 (65%) | ||
| Mucin | <723..817 | CDD:250634 | 36/99 (36%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C194327860 | |
| Domainoid | 1 | 1.000 | 235 | 1.000 | Domainoid score | I10487 |
| eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H443 | |
| Inparanoid | 1 | 1.050 | 1349 | 1.000 | Inparanoid score | I1241 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG49125 | |
| OrthoDB | 1 | 1.010 | - | - | D179614at33208 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0011479 | |
| OrthoInspector | 1 | 1.000 | - | - | oto48383 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_103130 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR24270 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R7933 |
| SonicParanoid | 1 | 1.000 | - | - | X1052 | |
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| ZFIN | 1 | 1.500 | - | - | ||
| 17 | 17.340 | |||||