DRSC/TRiP Functional Genomics Resources

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Protein Alignment VLDLR and cue

DIOPT Version :10

Sequence 1:NP_003374.3 Gene:VLDLR / 7436 HGNCID:12698 Length:873 Species:Homo sapiens
Sequence 2:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster


Alignment Length:506 Identity:96/506 - (18%)
Similarity:170/506 - (33%) Gaps:181/506 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   473 ALDADIAAQKLFWADLSQK--AIFSASIDDKVGRHV--KMIDNVYNPA--AIAVDWVYKTIYWTD 531
            ||..|.:.:.:::.||..:  :|||...|.....||  :.|....|.:  .:|.|.:...::|:|
  Fly    63 ALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIARTGNESVGGLAYDPLNMNLFWSD 127

Human   532 AASKTISVATLDGTKRKFL---FNSDLREPASIAVDPLSGFVYW--SDWGEPAKIEKAGMNGFDR 591
            ...:.|..|.:.|:....:   .:::...|..:|||.....:||  |:...|. :|:..::|.:|
  Fly   128 TEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSNVTHPT-VERINLDGSNR 191

Human   592 RPLVTADIQWPNGITLDLIKSRLYWLDSKLHMLSSVD---LNGQDRRIVLKSLEFLAHPLALTIF 653
            ..:::::|..|.||.:|.:..||:|:|....:..||:   |:|.||::|||....  .||.|.:.
  Fly   192 TVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVVLKDKHH--EPLNLAVT 254

Human   654 EDRVYWIDGENEAVYGANK----------------------FTGSE-------LATLVNNLNDAQ 689
            .|.:||.|....||:...|                      |...|       |..:.|...:|:
  Fly   255 NDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPEPVAEDCPLVRVANLSEEAR 319

Human   690 DIIV----YHEL----------------------------------------------------- 697
            .|:.    |..|                                                     
  Fly   320 GIVARTGFYQRLQKDHHCASIVRKVKERVDEQSRKFEIRSLLDQKIKVLEDERCMNDGEYRAATD 384

Human   698 --VQPSG----------------------------KNWCEEDMENGGCEY-----LCLPAPQI-- 725
              :.|:|                            |.:|:...:...||.     |||.....  
  Fly   385 LCICPTGFKGSRCEIRECHNYCVHGTCQMSELAYPKCYCQPGFKGERCELSVCSGLCLNGGHCRV 449

Human   726 -NDHSPKYTCSCPSGYNVEENGRDCQSTATTV----------------------TYSETKDTNTT 767
             .|.:...:|.||:.:    .|..|:..:|.:                      ...|....|:|
  Fly   450 SKDENEAPSCECPAKF----GGARCEQNSTEICSLFCRLLKHEPEMYVPFGCHSICEELAQDNST 510

Human   768 EISATSGLVPGGINVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLM 818
            .|:     :|...::     ||.:.|:    .|....:::||:..|...|:
  Fly   511 NIA-----IPQYQHL-----EVCLTPR----VWTSSVIIILVVGIVSSLLL 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VLDLRNP_003374.3 LDLa 33..67 CDD:238060
LDLa 71..103 CDD:197566
Ldl_recept_a 111..149 CDD:395011
LDLa 154..188 CDD:238060
Ldl_recept_a 192..224 CDD:395011
Ldl_recept_a 237..273 CDD:395011
Ldl_recept_a 276..312 CDD:395011
Ldl_recept_a 320..350 CDD:395011
FXa_inhibition 360..394 CDD:464251
EGF_CA 396..426 CDD:214542
Ldl_recept_b 481..522 CDD:459654 11/46 (24%)
LY 505..547 CDD:214531 11/45 (24%)
Ldl_recept_b 568..608 CDD:459654 11/41 (27%)
LY 592..634 CDD:214531 13/44 (30%)
Ldl_recept_b 655..695 CDD:459654 13/72 (18%)
FXa_inhibition 706..749 CDD:464251 11/50 (22%)
cueNP_612113.2 TerD_like 48..>85 CDD:473128 5/21 (24%)
YvrE <73..>164 CDD:442613 20/90 (22%)
LY 101..141 CDD:214531 8/39 (21%)
Ldl_recept_b 167..208 CDD:459654 11/41 (27%)
LY 193..237 CDD:214531 13/43 (30%)
Blue background indicates that the domain is not in the aligned region.

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