DRSC/TRiP Functional Genomics Resources

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Protein Alignment VIM and LamC

DIOPT Version :9

Sequence 1:NP_003371.2 Gene:VIM / 7431 HGNCID:12692 Length:466 Species:Homo sapiens
Sequence 2:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster


Alignment Length:472 Identity:139/472 - (29%)
Similarity:224/472 - (47%) Gaps:91/472 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    31 VTTSTRTYSLGSALRPSTSRSLYASSPGGVYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTE 95
            ||.:||           .||:..::..||  |:.||.|...|.....|                 
  Fly     6 VTLNTR-----------VSRASTSTPVGG--ASTSSRVGATSPTSPTR----------------- 40

Human    96 FKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAEL---EQLKGQGKSRLGDLYEEEMREL 157
              .:|..||.|||.||||.|.|||::|.||.:|..|..||   :....:..|.|..:||:|:...
  Fly    41 --TSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAA 103

Human   158 RRQVDQLTNDKARVEV-------ERDNL-------------AEDIMRL----------------- 185
            |:.:|:...:||::|:       |.|:|             ||:..||                 
  Fly   104 RKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLA 168

Human   186 -REKLQEE----MLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQEL 245
             |:|.:::    .|:.|.....|...|:.::..:|||:|||.:.:||:||:||..::|.:|:.|.
  Fly   169 DRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTET 233

Human   246 QAQIQEQHVQIDVDVSK---PDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND 307
            :::.|.:..:||..:|:   ..|..:|:::|.|||.....|.:|.|..|.::..:|..||||...
  Fly   234 RSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQ 298

Human   308 ALRQAKQESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM 372
            ....|.:|....|.::..|..::..|:.||..|..::||:|.....|...:...|..|:.|:|.|
  Fly   299 GSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRM 363

Human   373 KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTH 437
            ::|||..|:|||.|:::|::||:|||.|.|||.|||.|:::..|.      |.|....:....:|
  Fly   364 RDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPG------RPTTDSGISSNGSH 422

Human   438 SKRTLLIKTVETRDGQV 454
                 |..:..:|.|:|
  Fly   423 -----LTASASSRSGRV 434

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity