DRSC/TRiP Functional Genomics Resources

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Protein Alignment VCAM1 and side-II

DIOPT Version :9

Sequence 1:NP_001069.1 Gene:VCAM1 / 7412 HGNCID:12663 Length:739 Species:Homo sapiens
Sequence 2:NP_001014485.3 Gene:side-II / 3346206 FlyBaseID:FBgn0259213 Length:1064 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VCAM1NP_001069.1 IG 33..112 CDD:214652
Ig_VCAM-1 116..214 CDD:143313
IGc2 238..298 CDD:197706
I-set 313..399 CDD:333254
Ig_VCAM-1 404..502 CDD:143313
IG_like 519..596 CDD:214653
IG 609..685 CDD:214652
side-IINP_001014485.3 IG_like 55..160 CDD:214653
Ig 57..160 CDD:299845
Ig 188..251 CDD:299845
Ig 289..363 CDD:299845
IG_like 289..351 CDD:214653
Ig_2 376..460 CDD:290606
IG_like 383..454 CDD:214653
Ig 470..548 CDD:299845
IG_like 481..557 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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