| Sequence 1: | NP_001069.1 | Gene: | VCAM1 / 7412 | HGNCID: | 12663 | Length: | 739 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_037021.1 | Gene: | Vcam1 / 25361 | RGDID: | 3952 | Length: | 739 | Species: | Rattus norvegicus |
| Alignment Length: | 739 | Identity: | 568/739 - (76%) |
|---|---|---|---|
| Similarity: | 640/739 - (86%) | Gaps: | 0/739 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MPGKMVVILGASNILWIMFAASQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS 65
Human 66 PLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAG 130
Human 131 KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC 195
Human 196 RAKLHIDEMDSVPTVRQAVKELQVYISPKNTVISVNPSTKLQEGGSVTMTCSSEGLPAPEIFWSK 260
Human 261 KLDNGNLQHLSGNATLTLIAMRMEDSGIYVCEGVNLIGKNRKEVELIVQEKPFTVEISPGPRIAA 325
Human 326 QIGDSVMLTCSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFENEHSYLCTVTCGHK 390
Human 391 KLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETILENIEFLED 455
Human 456 TDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYVNVAPRDTTVLVSP 520
Human 521 SSILEEGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKMEDSGVYLCEGINQA 585
Human 586 GRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPETWIILKKKAETGDTVLKSID 650
Human 651 GAYTIRKAQLKDAGVYECESKNKVGSQLRSLTLDVQGRENNKDYFSPELLVLYFASSLIIPAIGM 715
Human 716 IIYFARKANMKGSYSLVEAQKSKV 739 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| VCAM1 | NP_001069.1 | IG | 33..112 | CDD:214652 | 62/78 (79%) |
| Ig_VCAM-1 | 116..214 | CDD:143313 | 67/97 (69%) | ||
| IGc2 | 238..298 | CDD:197706 | 54/59 (92%) | ||
| I-set | 313..399 | CDD:333254 | 62/85 (73%) | ||
| Ig_VCAM-1 | 404..502 | CDD:143313 | 69/97 (71%) | ||
| IG_like | 519..596 | CDD:214653 | 55/76 (72%) | ||
| IG | 609..685 | CDD:214652 | 64/75 (85%) | ||
| Vcam1 | NP_037021.1 | Ig | 32..98 | CDD:299845 | 52/65 (80%) |
| IG_like | 35..110 | CDD:214653 | 60/74 (81%) | ||
| Ig2_VCAM-1 | 116..214 | CDD:143313 | 67/97 (69%) | ||
| IG_like | 232..308 | CDD:214653 | 63/75 (84%) | ||
| IGc2 | 238..298 | CDD:197706 | 54/59 (92%) | ||
| IG_like | 321..400 | CDD:214653 | 56/78 (72%) | ||
| IGc2 | 328..386 | CDD:197706 | 43/57 (75%) | ||
| Ig2_VCAM-1 | 404..502 | CDD:143313 | 69/97 (71%) | ||
| Ig_2 | 514..596 | CDD:290606 | 57/81 (70%) | ||
| IG_like | 519..596 | CDD:214653 | 55/76 (72%) | ||
| Ig_3 | 604..672 | CDD:290638 | 56/67 (84%) | ||
| IG_like | 609..685 | CDD:214653 | 64/75 (85%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C83689428 | |
| Domainoid | 1 | 1.000 | 133 | 1.000 | Domainoid score | I35446 |
| eggNOG | 1 | 0.900 | - | - | E1_2CMXT | |
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H838 | |
| Inparanoid | 1 | 1.050 | 1147 | 1.000 | Inparanoid score | I4392 |
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG41743 | |
| OrthoDB | 1 | 1.010 | - | - | D160659at32523 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0008757 | |
| OrthoInspector | 1 | 1.000 | - | - | oto129770 | |
| orthoMCL | 1 | 0.900 | - | - | OOG6_116245 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR13771 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X12262 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 1 | 0.960 | - | - | ||
| 18 | 18.270 | |||||