DRSC/TRiP Functional Genomics Resources

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Protein Alignment VARS1 and GstD4

DIOPT Version :9

Sequence 1:XP_005249419.1 Gene:VARS1 / 7407 HGNCID:12651 Length:1265 Species:Homo sapiens
Sequence 2:NP_524913.1 Gene:GstD4 / 48337 FlyBaseID:FBgn0010040 Length:215 Species:Drosophila melanogaster


Alignment Length:179 Identity:35/179 - (19%)
Similarity:56/179 - (31%) Gaps:83/179 - (46%)


- Green bases have known domain annotations that are detailed below.


Human    53 PPPRLPALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLP 117
            |...:|.|..  .|..:|.:.|:                |..||:::..  |..|.|        
  Fly    48 PQHTIPTLVD--NGFAIWESRAI----------------AVYLVEKYGK--DDSLFP-------- 84

Human   118 ALGLRSSAQDPQ--AVL-------------------------GALGR---------ALSPLEEWL 146
                    .|||  |::                         |.||.         |...|:.:|
  Fly    85 --------NDPQKRALINQRLYFDMGTLHDSFMKYYYPFIRTGQLGNAENYKKVEAAFEFLDIFL 141

Human   147 RLHTYLAGEAPTLADLAAVTAL----LLPFRYVLDPPARRIWNNVTRWF 191
            ....|:||...|:||:|.::::    ::.|.....|       ||.||:
  Fly   142 EGQDYVAGSQLTVADIAILSSVSTFEVVEFDISKYP-------NVARWY 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VARS1XP_005249419.1 GstA <56..203 CDD:223698 34/176 (19%)
GST_C_ValRS_N 92..213 CDD:198327 29/140 (21%)
PTZ00419 283..1265 CDD:240411
ValRS_core 336..939 CDD:185677
tRNA-synt_1_2 514..>610 CDD:290334
Anticodon_Ia_Val 939..1076 CDD:153416
Val_tRNA-synt_C 1197..1259 CDD:287436
GstD4NP_524913.1 PRK10542 1..184 CDD:182533 35/179 (20%)
GST_N_Delta_Epsilon 1..74 CDD:239343 8/43 (19%)
GST_C_Delta_Epsilon 88..204 CDD:198287 21/103 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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