DRSC/TRiP Functional Genomics Resources

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Protein Alignment VARS1 and GstT1

DIOPT Version :9

Sequence 1:XP_005249419.1 Gene:VARS1 / 7407 HGNCID:12651 Length:1265 Species:Homo sapiens
Sequence 2:NP_610509.2 Gene:GstT1 / 35995 FlyBaseID:FBgn0050000 Length:228 Species:Drosophila melanogaster


Alignment Length:123 Identity:27/123 - (21%)
Similarity:44/123 - (35%) Gaps:36/123 - (29%)


- Green bases have known domain annotations that are detailed below.


Human   750 PDGRYWVSGRNEAEAREKAAKEFGVSPDK---ISLQQDEDVLDTWFSSGLF---PLSILGWPNQS 808
            |....|:            |.:.|.:|.:   ::|::.|.:.|.:.|...|   |..:.|.....
  Fly    15 PSRALWI------------AMKLGKTPFEDCPVALRKQEQLTDEYRSINRFQKVPAIVDGKFQLG 67

Human   809 EDLSV-------------FYPGTLLETGH-DILFFWVARMVMLGLKLTGRLPFREVYL 852
            |.:|:             .||.||.|... |....|    ....::|...|.||:|:|
  Fly    68 ESVSIVRYLADKGVFSEQLYPKTLEERARVDEFLEW----QHFNVRLVCSLFFRQVWL 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VARS1XP_005249419.1 GstA <56..203 CDD:223698
GST_C_ValRS_N 92..213 CDD:198327
PTZ00419 283..1265 CDD:240411 27/123 (22%)
ValRS_core 336..939 CDD:185677 27/123 (22%)
tRNA-synt_1_2 514..>610 CDD:290334
Anticodon_Ia_Val 939..1076 CDD:153416
Val_tRNA-synt_C 1197..1259 CDD:287436
GstT1NP_610509.2 GstA 5..204 CDD:223698 27/123 (22%)
GST_N_Theta 5..80 CDD:239348 14/76 (18%)
GST_C_Theta 93..218 CDD:198292 9/33 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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