Sequence 1: | NP_996816.3 | Gene: | USH2A / 7399 | HGNCID: | 12601 | Length: | 5202 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261500.1 | Gene: | Dscam2 / 38788 | FlyBaseID: | FBgn0265296 | Length: | 2101 | Species: | Drosophila melanogaster |
Alignment Length: | 2389 | Identity: | 474/2389 - (19%) |
---|---|---|---|
Similarity: | 768/2389 - (32%) | Gaps: | 754/2389 - (31%) |
- Green bases have known domain annotations that are detailed below.
Human 936 PGFYISP-------GNATGCLPCSC-----------HTTGA-------VNHICNSLTGQCVCQDA 975
Human 976 SIAGQRCDQCKDHYFGFDPQTGRCQPCNCHLSGALNETCHLVTGQCFCKQFVTGS-KCDACVPSA 1039
Human 1040 SHLDVNNLLGCSKTPFQQPPPRGQVQSSSAINLSW--SPPDSPNAHWLTYSLLRDG-FEIYTTED 1101
Human 1102 QYPYSIQYFLDTDLLPYTKYSYYIETTNVHGSTRSVAVTYKTK-----------PGV-------- 1147
Human 1148 ---PEGNLTLSYIIPIGSDSVTLTWTTLSNQSGPIEKYILSCAPLAGGQPCVSYEGHETSATIWN 1209
Human 1210 LVPFAKYDFSVQACTSGG----CLHSLPITVTTAQAPPQRLSPPKMQKISSTELHVEWSPPAELN 1270
Human 1271 GIIIRYELYMRRLRSTKETTSEESRV-FQSSGWLSPHSFVESAN--ENALKPPQTMTTITGLEPY 1332
Human 1333 TKYEFRVLAVNMAGSVSSAWVSERTGESAPVFMIPPSVFPLSSYSLNISWEKPADNVTRGKVVGY 1397
Human 1398 DINMLSEQSPQQSIPMAFSQLLHTAKSQELSYTVEGLK-----PYRIYEFTITLCNSV------- 1450
Human 1451 ----------GCVTSASGAGQTLAAA-------PAQLRPPLVKGINSTTIHLR----WFPPEELN 1494
Human 1495 G-------PSPIYQLERRESSLPALMTTMMK----GI-------------RFIGNGYCKFPSSTH 1535
Human 1536 PVNTDF----TGIKASFRTKVPEGLIVFAASPGNQEEYFALQLKKGRLYFLFDPQGSPVEVTTTN 1596
Human 1597 DHGKQYSDGKWHEIIAIRHQAFGQITLDGIYTGS-SAILNGSTVIGDNTGVFLGGLPRSYTILRK 1660
Human 1661 DPEIIQKGFVGCLKDVHFMKNY------NPSAIWEPLDWQSSEEQINVYNSWEGCPASLNEGAQF 1719
Human 1720 LGAGFLELHPYMFHGGMNFEISFKFRTDQLNGLLLFVYNKDGPDFLAMELKSGI-------LTFR 1777
Human 1778 LNTSLAFTQVDLLLGLSYCNGKWNKVIIKK-EGSFISASVNGLMKHASESGDQPLVVNSPVYVGG 1841
Human 1842 IPQELLNSYQHLCLEQGFGGCMKDVKFTRGAVVNL-ASVSSGAVRVNLDGCL------STDS--- 1896
Human 1897 ---AVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLYRVIASHEGGSVYSDWSRGRTTGAAPQSVP 1958
Human 1959 TPSRVRSLNGYSIEVTWDEPVV-RGVIEKYILKAYSEDSTRPPRM---PSASAEFVNTSNLTGIL 2019
Human 2020 TGLLPFKNYAVTLTACTLAGCTESSHALNISTPQEAPQEVQPPV---AKSLPSS-LLLSWNPP-- 2078
Human 2079 ----KKANGIITQYCLYMDGRLIYS---------GSEENYIVTDLAVFTPHQFLLSACTHVGC-- 2128
Human 2129 ---TNSSWVLLYTAQLPPEHVDSPVLTVLDSRTIHIQWKQP--RKISGILERYVLYMSNHTHDFT 2188
Human 2189 IWSVIYNSTELFQDHM-------LQYVLPG----NKYLIKLGACT--GGGCTVSEASEALTDEDI 2240
Human 2241 PEGVPAPKAHSYSPDSFNVSWTEPEYPNGVITSYGLYLDGILIHNSSELS------------YRA 2293
Human 2294 YGFAPWSLHSFRVQACTAKGCAL---------------------GPLVENRTLEAPPEGTVNVFV 2337
Human 2338 KTQGSRKAHVRW---EAPFRPNGLLTHSVLFTGIFYVDPVGNNYTLLNVTKVMYSGEETNLWVLI 2399
Human 2400 DGLVPFTNYTVQVNISNSQGS-LITDPITIAMPPGAPDGVLPPRLSSATPTSLQVVWSTPARNNA 2463
Human 2464 PGSPRYQLQMRSGDSTHGFLELFSNPSASLSYEVSDLQPYTEYMFRLVASNGFGSAHSSWIPFM- 2527
Human 2528 TAEDKPGPVVPPILLDVKSRMMLVTWQHPRKSNGVITHYNIYLHGRLYLRTPGN----VTNC--- 2585
Human 2586 ----TVMHLHPYTAYKFQVEACTSKGCSLSPESQTVWTLPGAPEGIPSPELF---SDTPTSVIIS 2643
Human 2644 WQPPTHPNGLVENFTIERRVKGKEEVTTLVTLPRSHSMRFIDKTSALSPWTKYEYRVLMSTLHGG 2708
Human 2709 TNSSAWVEVTTRPSRPAGVQPPVVTVLEPDAVQVTWKPPLIQNGDILSYEIHMPDPHITLTNVTS 2773
Human 2774 AVLSQKVTHLIPFTNYSVTIVACSGGNGYLGGCTESLPTYVTTHPTVPQNVGPLSVIPLSESYVV 2838
Human 2839 ISW-----QPPSKPNGPNLRYELLRRKI----------QQPLASNPPEDLNRWHN------IYSG 2882
Human 2883 TQW--------LYEDK-----GLSRFTTYEYMLFV------HNS----VGFTPSREVTVTTLAGL 2924
Human 2925 PE-----------RGANLTA---------SVLNHTAIDVRWAKPTVQDLQGEVEYYTLFWSSATS 2969
Human 2970 NDSLKILPDVNSHVIGHLKPNTEYWIFISVFNGVHSINSAGLHATTCDG 3018 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
USH2A | NP_996816.3 | LamGL | 146..283 | CDD:214722 | |
Laminin_N | 291..516 | CDD:413488 | |||
EGF_Lam | 517..565 | CDD:238012 | |||
EGF_Lam | 574..639 | CDD:238012 | |||
Laminin_EGF | 641..691 | CDD:395007 | |||
EGF_Lam | 694..733 | CDD:214543 | |||
Laminin_EGF | 747..795 | CDD:395007 | |||
EGF_Lam | 794..844 | CDD:238012 | |||
EGF_Lam | 847..897 | CDD:214543 | |||
EGF_Lam | 900..948 | CDD:238012 | 4/18 (22%) | ||
EGF_Lam | 950..1000 | CDD:238012 | 11/67 (16%) | ||
EGF_Lam | 1001..>1037 | CDD:238012 | 6/36 (17%) | ||
fn3 | 1058..1132 | CDD:394996 | 14/76 (18%) | ||
fn3 | 1150..1227 | CDD:394996 | 19/76 (25%) | ||
FN3 | 1242..1357 | CDD:238020 | 20/117 (17%) | ||
FN3 | 1368..1451 | CDD:214495 | 14/104 (13%) | ||
LamG | 1519..1678 | CDD:238058 | 26/176 (15%) | ||
LamG | 1716..1868 | CDD:238058 | 23/159 (14%) | ||
FN3 | 1956..2051 | CDD:238020 | 20/98 (20%) | ||
FN3 | 2241..2313 | CDD:238020 | 28/83 (34%) | ||
FN3 | 2329..2428 | CDD:238020 | 22/102 (22%) | ||
FN3 | 2432..2528 | CDD:238020 | 28/96 (29%) | ||
FN3 | 2533..2619 | CDD:238020 | 24/96 (25%) | ||
FN3 | 2621..2719 | CDD:238020 | 18/100 (18%) | ||
FN3 | 2724..2799 | CDD:238020 | 9/74 (12%) | ||
FN3 | 2818..2920 | CDD:238020 | 30/145 (21%) | ||
FN3 | 2925..3015 | CDD:238020 | 17/109 (16%) | ||
FN3 | 3026..>3087 | CDD:238020 | |||
FN3 | <3449..3494 | CDD:238020 | |||
FN3 | 3503..3586 | CDD:238020 | |||
FN3 | 3590..3676 | CDD:238020 | |||
FN3 | 3680..3767 | CDD:238020 | |||
fn3 | 3777..3856 | CDD:394996 | |||
FN3 | 3866..3960 | CDD:238020 | |||
FN3 | 3964..4057 | CDD:238020 | |||
fn3 | 4161..4247 | CDD:394996 | |||
FN3 | 4268..4351 | CDD:238020 | |||
fn3 | 4357..4428 | CDD:394996 | |||
FN3 | 4444..4516 | CDD:238020 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 4518..4541 | ||||
FN3 | 4529..4627 | CDD:238020 | |||
FN3 | 4636..4730 | CDD:238020 | |||
FN3 | 4826..4927 | CDD:238020 | |||
PDZ-binding | 5200..5202 | ||||
Dscam2 | NP_001261500.1 | Ig | 51..127 | CDD:299845 | 16/93 (17%) |
Ig | 138..>203 | CDD:299845 | 19/88 (22%) | ||
I-set | 238..327 | CDD:254352 | 24/105 (23%) | ||
Ig | 247..327 | CDD:299845 | 22/96 (23%) | ||
I-set | 332..418 | CDD:254352 | 19/108 (18%) | ||
IGc2 | 344..407 | CDD:197706 | 13/85 (15%) | ||
IG_like | 432..517 | CDD:214653 | 17/110 (15%) | ||
IGc2 | 436..507 | CDD:197706 | 13/96 (14%) | ||
I-set | 521..610 | CDD:254352 | 17/90 (19%) | ||
IGc2 | 533..597 | CDD:197706 | 12/65 (18%) | ||
Ig | 630..699 | CDD:143165 | 15/98 (15%) | ||
IG_like | 714..802 | CDD:214653 | 20/131 (15%) | ||
Ig | 725..802 | CDD:299845 | 18/112 (16%) | ||
Ig | 823..894 | CDD:143165 | 20/106 (19%) | ||
FN3 | 906..1006 | CDD:238020 | 20/99 (20%) | ||
FN3 | 1013..1111 | CDD:238020 | 22/97 (23%) | ||
FN3 | 1119..1209 | CDD:238020 | 27/103 (26%) | ||
FN3 | 1219..1313 | CDD:238020 | 29/95 (31%) | ||
Ig | 1336..1402 | CDD:143165 | 21/95 (22%) | ||
FN3 | 1409..1498 | CDD:238020 | 28/96 (29%) | ||
FN3 | 1515..1588 | CDD:238020 | 19/74 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |