DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42340 and Kcnk1

DIOPT Version :10

Sequence 1:NP_001368973.1 Gene:CG42340 / 7354472 FlyBaseID:FBgn0259242 Length:759 Species:Drosophila melanogaster
Sequence 2:NP_067720.1 Gene:Kcnk1 / 59324 RGDID:621447 Length:336 Species:Rattus norvegicus


Alignment Length:420 Identity:91/420 - (21%)
Similarity:147/420 - (35%) Gaps:163/420 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 SLCG--CQKAPKSH----CISATGVLLL-VLLYTAMGSIVFVTLEGELEDGGALETAVAASKPYP 138
            ||.|  |.:..:.|    |.   |.|:| .|||...|::||.::|                  .|
  Rat     4 SLAGSSCVRLVERHRSAWCF---GFLVLGYLLYLVFGAVVFSSVE------------------LP 47

  Fly   139 RTELANAEIRSRTVDRLWSITEDLNILYKENWTRLAAQEVQLFQDTLLRAVRQSKVYPPGGIQL- 202
            ..:|...|:|.            |...:.|....|:..:::.|...:|.|...       |:.: 
  Rat    48 YEDLLRQELRK------------LKRRFLEEHECLSEPQLEQFLGRVLEASNY-------GVSVL 93

  Fly   203 -NAPTH-KWTYASAFLYSLTLITTIGYGGISPRTQWGRVAALVYALFGIPIVLLYLSAMGEALSA 265
             ||..: .|.:.||..::.|:::|.|||...|.:..|:...::|::.|||..||:|:|:.:.::.
  Rat    94 SNASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRVTV 158

  Fly   266 GMRCLFRRQRVKGGPGGGPGGGASGGVGSGAGGSGGGRKTDKNKGQGHYGHQKLHQYGLPPSVYQ 330
            .:.   ||..:                                     |.|.:   :|....|  
  Rat   159 HVT---RRPVL-------------------------------------YFHIR---WGFSKQV-- 178

  Fly   331 QQQAQQAQQAQQQQAQQAQQAQQQQVQQGKKSSGNRRGSPSVPISICVCVLL------CYVSSGA 389
                                                       ::|...|||      |:....|
  Rat   179 -------------------------------------------VAIVHAVLLGFVTVSCFFFIPA 200

  Fly   390 ILFHKLQ-NWSVLESLYFCFTSLGTIGFGEMAPNGAV-----ALYT--ASAYILVG---MAVVAM 443
            .:|..|: :|:.|||.||||.||.|||.|:..|....     .||.  .:.|:|:|   |.||..
  Rat   201 AVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLE 265

  Fly   444 CFSLIQTEIVLWLRRFSV-------QDHVM 466
            .|..:. |:..:.:.|.|       |.|:|
  Rat   266 TFCELH-ELKKFRKMFYVKKDKDEDQVHIM 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42340NP_001368973.1 Ion_trans_2 <208..264 CDD:462301 18/55 (33%)
Ion_trans_2 380..453 CDD:462301 32/89 (36%)
Kcnk1NP_067720.1 Ion_trans_2 <98..157 CDD:462301 18/58 (31%)
Selectivity filter 1. /evidence=ECO:0000250|UniProtKB:O00180 117..122 3/4 (75%)
Ion_trans_2 191..267 CDD:462301 27/75 (36%)
Selectivity filter 2. /evidence=ECO:0000250|UniProtKB:O00180 225..230 3/4 (75%)
Important for intracellular retention in recycling endosomes. /evidence=ECO:0000250|UniProtKB:O00180 293..299 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 310..336
Blue background indicates that the domain is not in the aligned region.

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