DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42342 and Col9a2

DIOPT Version :9

Sequence 1:NP_001189234.1 Gene:CG42342 / 7354466 FlyBaseID:FBgn0259244 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001102145.1 Gene:Col9a2 / 362584 RGDID:1307029 Length:688 Species:Rattus norvegicus


Alignment Length:710 Identity:248/710 - (34%)
Similarity:296/710 - (41%) Gaps:235/710 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 QCQCQPGPPGPPGPPGKRGKRGKKGDSGEKGDPGLNGISGEKGAAGKPGDKGQKGDVGHPGMDVF 301
            |.:..||.||.|||||..|..|..|..|:||.||..|..|.||..||||..|..   |.||:|..
  Rat    23 QIRGPPGEPGLPGPPGPPGVPGSDGIDGDKGPPGKVGPPGSKGEPGKPGPDGPD---GKPGIDGL 84

  Fly   302 QTVKGLKRSVTTLHGGTLGYAEIVAVKDLQEAGVNVSASTVIKLKGEPGEPGPPGPPGE--AGQP 364
            ...||....:     ||.|                        :||:||.|||||.||.  ||.|
  Rat    85 MGAKGEPGPM-----GTPG------------------------IKGQPGLPGPPGLPGPGFAGPP 120

  Fly   365 GAPGERGPPGEIGAQGPQGEAGQPGVAGPPGVAGAPGTKG-----------------DKGDRGDR 412
            |.||..|.|||||..||:|:.|..|.:||||..|.||..|                 ..|.:|.:
  Rat   121 GPPGPVGLPGEIGTPGPKGDPGPEGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPAGVKGPQ 185

  Fly   413 GLTTTIKGDEFPTGII-----EGPPGPAGP---------PGPPGEPGARGEPGPIGP-------- 455
            || ..:||.....||:     :|.|||.|.         |||||..|.||.||..||        
  Rat   186 GL-QGVKGHPGKRGILGDPGRQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAGPKGEMGPRG 249

  Fly   456 ----------AGPPGEKGPRGKRG----KRIFGPGGTKIDEDYDDPPVTLLRGPPGPPGIAGKDG 506
                      ||||||:||||..|    |...|..|.:..:....|     :|..|||||.||||
  Rat   250 YKGMVGSIGAAGPPGEEGPRGPPGRAGEKGDVGSQGARGPQGITGP-----KGTTGPPGIDGKDG 309

  Fly   507 RDGRDGSKGEPGEPGEPGSLGPRGLDGLPGEPGIEGPP---------GLPGYQGPP--------- 553
            ..|..|.||..|:.|.|||.|.:||.|:||:||.:|.|         |.||..|||         
  Rat   310 TPGIPGMKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPGQQGFPGISGPPGKEGEPGPR 374

  Fly   554 ---------GEKGDRGDIGPPGLMGP------------PGLPGPPGYPGVKGDKGDRGDSYRKMR 597
                     |||||:|:.||.|..||            ||:|||.|.||:|||||..|.:     
  Rat   375 GETGPQGIMGEKGDQGERGPVGQPGPQGRQGPKGEQGSPGIPGPQGLPGIKGDKGSPGKT----- 434

  Fly   598 RRQDDGMSDAPHMPTIEYLYGPPGPPGPMGPPGHTGSQGERGLDGRKGDPGEKGHKGDQGPMGLP 662
                                   ||.|.:|.||..|..||:|..|..|:||.||.:|.:|..|.|
  Rat   435 -----------------------GPRGGVGDPGVAGLPGEKGEKGLSGEPGLKGQQGVRGEPGYP 476

  Fly   663 GPMGMRGESGPSGPSGKAGIPGPPGLDGMKGAQGETGHKGERGD--------------------- 706
            ||   .|::|..|..|..|:|||.||.|.:|..|:.|.:|..|.                     
  Rat   477 GP---SGDAGAPGVQGYPGLPGPRGLVGDRGVPGQPGRQGVVGRAASDQHIVDVVLKMIQEQLAE 538

  Fly   707 ------------------PGLPGTDGIPGQEGPRGEQGSR------------GDAGPPGKRGRKG 741
                              ||.||..|.||::||.|..|.|            |:.||.||||.||
  Rat   539 VAVSAKREALGATGMVGLPGPPGPPGYPGKQGPNGHPGPRGIPGIVGAVGQIGNTGPKGKRGEKG 603

  Fly   742 DRGDKGEQGVPGLDAPCPLGADGLP------------------LPGCGWRPPKEPIISTP 783
            |:|:.| :|.||:  |.|.|..|||                  .||...||.:...:..|
  Rat   604 DQGEMG-RGHPGM--PGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGRPGPVGLP 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42342NP_001189234.1 DUF4763 130..>210 CDD:292582
Collagen 366..413 CDD:189968 23/63 (37%)
Collagen 660..718 CDD:189968 26/96 (27%)
Collagen 690..748 CDD:189968 29/108 (27%)
Col9a2NP_001102145.1 Collagen 258..315 CDD:189968 26/61 (43%)
Collagen 321..379 CDD:189968 21/57 (37%)
Collagen 360..418 CDD:189968 18/57 (32%)
Collagen 429..486 CDD:189968 26/87 (30%)
Collagen 459..516 CDD:189968 26/59 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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