DRSC/TRiP Functional Genomics Resources

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Protein Alignment OtopLc and LOC100496331

DIOPT Version :10

Sequence 1:NP_001303575.1 Gene:OtopLc / 7354434 FlyBaseID:FBgn0259150 Length:1596 Species:Drosophila melanogaster
Sequence 2:XP_002939616.1 Gene:LOC100496331 / 100496331 XenbaseID:XB-GENE-29083131 Length:570 Species:Xenopus tropicalis


Alignment Length:509 Identity:122/509 - (23%)
Similarity:208/509 - (40%) Gaps:106/509 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1007 RDAHYGSFYLRMGAVAFGIGSMIYSGLEFGQYFELNPDTKCHNVLLALTPATRMAFIFIQMYFIF 1071
            :|.|.|..::|.|.|.||.|::|.:.|..|...|.   ..|...:..:.|..:..||..|..|::
 Frog    94 KDGHAGPIWMRGGIVLFGTGTLIMTVLRIGHAVEY---LDCETPMKIIHPVIQAVFIITQTCFLW 155

  Fly  1072 LNNEQIKVYRYKIIARFGLMHMIGTNLAVWLNVLIQETKHEILTF--YNPENRTLRISHRIPGHS 1134
            ::.:.. |..||...|.|||.::..||.:|:..:.:|.:|..:..  |...|.||        :|
 Frog   156 VSCKHC-VQIYKNATRCGLMVLLSINLTLWVIAVTEEARHHTIEIQRYLQSNATL--------NS 211

  Fly  1135 RGHAIIQHDPTAHLRVPRGLKGPYQIFECRRTNIIGTLVQDASPFLFPCTIEYSLICAAILYVMW 1199
            ...:....:|.:...:..        :.|...::...|..:.. :|:|..|||:|..||:||:||
 Frog   212 SKESEETEEPFSREDIDE--------YSCSCQSVCKFLPTEYY-YLYPFNIEYNLFAAAMLYIMW 267

  Fly  1200 RSISRPQTPTPQRPDMISSPMKRSPHHYSVDCARAHK---GLFVGILILVLTIISLIIFFVLISR 1261
            :::.|      |..|..|......|.      .|.|.   ||..|:.:||..::..|::.|...:
 Frog   268 KNVGR------QIDDSGSQRFGLGPG------VRKHVPLFGLVTGVSVLVTGLVMFILYEVGREK 320

  Fly  1262 PEFVAMAVTEVTICELLIYGTATIATLVGMI----QIRHLQYDAYRSFSLDDILLVG---AQTGS 1319
            |....:::|...|..::..|...:|.|.|:|    ..|.:..:...|.:||..||:|   ||.|.
 Frog   321 PANRWLSLTTFYIFHVICLGLMCLANLAGIIIFKLDKRSMDNEKNPSRTLDMALLLGATLAQYGI 385

  Fly  1320 FLYNIFTVIA-GHFTLRSDDMLVPINALASIVQTACQTMFILDA--------------------- 1362
            ..|:|..:|| ..||:.  :.|..:.:|..|||.:.|.:||:..                     
 Frog   386 SYYSIIAMIATPPFTVL--NCLTLVYSLLMIVQHSLQNVFIIKGLYRLPPIYSHKQTDNNKLPKH 448

  Fly  1363 ---------------------------------SRRQAVSPE---HLRK-KPGREIVTFMLVVNL 1390
                                             |||..::.:   ||:| |..::|..|:.:.|:
 Frog   449 QEAIQQGPTQEVDGPHYVTSVLQPQDHPPVPRMSRRATLAAQLKTHLKKRKIMKDIYLFLFLSNI 513

  Fly  1391 AMWAISTLEKSRAESHPIQLNFYGLWAWTIITHVSMPLAIFYRFHSTVCLCEIW 1444
            ..|.:............:::.|||...|.:||::.:|..||||.|:...|.|::
 Frog   514 IFWIMPAFGARIMFDTGMEVRFYGFTIWVVITNICLPFGIFYRMHAAASLLELY 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OtopLcNP_001303575.1 Retinal <442..643 CDD:464722
Otopetrin 1015..1434 CDD:460840 115/489 (24%)
LOC100496331XP_002939616.1 Otopetrin 103..556 CDD:460840 114/487 (23%)
Blue background indicates that the domain is not in the aligned region.

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