DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment OtopLc and otop3

DIOPT Version :9

Sequence 1:NP_001303575.1 Gene:OtopLc / 7354434 FlyBaseID:FBgn0259150 Length:1596 Species:Drosophila melanogaster
Sequence 2:NP_001106584.1 Gene:otop3 / 100127796 XenbaseID:XB-GENE-993899 Length:681 Species:Xenopus tropicalis


Alignment Length:692 Identity:133/692 - (19%)
Similarity:243/692 - (35%) Gaps:262/692 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   895 LFSALYGKLLVVMGIAFPMAEVISTYIPP-----SFYEVYYLYLYIGSMIFLLFMYATLIWGRPK 954
            |||.|:|..|:.:|.....:..:|....|     ||..:..|...:.::..|||:          
 Frog   113 LFSGLFGLNLMFLGGTVVSSVALSNKAVPERDSQSFLCILMLLSSVWALYHLLFI---------- 167

  Fly   955 LPVPIASPSKSATKASGTDSMDESDTDSNSVHHRLPPPIPVRRPSLLSPLGRRDAHYGSFYLRMG 1019
                                    ...:.:|||                    |.|.|:.:|:..
 Frog   168 ------------------------RNQNGAVHH--------------------DHHAGAMWLKAS 188

  Fly  1020 AVAFGIGSMIYSGLEFGQYFELNPDTKCHNVLLALTPATRMAFIFIQMYFIFLNNEQIKVYRYKI 1084
            ...||:.|:|.|..|.|....|.   .|..::..:..:..:.|:.:|...::::.:.. |..:..
 Frog   189 LAIFGVCSIILSIFEIGHALLLQ---NCEILMDIVFFSIEIVFVSVQTVLLWVSCKDC-VQMHHS 249

  Fly  1085 IARFGLMHMIGTNLAVWLNVLIQETKHEILTFYNPENRTLRISHRIPGHSRGHAIIQHDPT---- 1145
            :.|:|:|..:.|::.:||..:|.::..:.|                       .|:|.:.|    
 Frog   250 VTRYGIMLTLATDILLWLTAVIDDSLEQDL-----------------------EILQSNSTQDES 291

  Fly  1146 ---AHLRVPR-----GLKGPYQIFECRRTNIIGTLVQDASPFLFPCTIEYSLICAAILYVMWRSI 1202
               |..:.|.     |||..|..                   :||..||||||||.:|::||:::
 Frog   292 NEMAQCQCPTDSMCWGLKQGYVT-------------------MFPFNIEYSLICATLLFIMWKNV 337

  Fly  1203 SRPQTPTPQRPDMISSPMKRSPHHYSVDCARAHKGLFVGILI---LVLTIISLIIFFVLISRPEF 1264
            .|       |..:.|.|.:   |.:.:      :|:..|.||   .:|..||:.:.:.:.:....
 Frog   338 GR-------REKLHSDPPR---HTFQL------RGIIYGPLIGGAALLVGISVFVQYQVEATSGM 386

  Fly  1265 VAMAVTEVTI-CELLIYGTATIATLVGMI------------------------------QIRHLQ 1298
            |::....:.. .:::|.....:.::.|:|                              :.::..
 Frog   387 VSILSYHMYYGYKMIILAPMIVCSVAGIIAHSLREKEKKGQKETGRSDQDWLHMEDVGSENKNTD 451

  Fly  1299 YDA--YRS--------------FSLDD---------------------------------ILLVG 1314
            |.:  |:|              |:||:                                 :|.|.
 Frog   452 YSSGQYQSSQGDEKIQGYSLAQFALDNEKEKLEHRQGNTTKKHNTHQGKMKNYTRKLDVTLLFVS 516

  Fly  1315 A--QTG-SFLYNIFTVIAGHFTLRSDDMLVPINALASIVQTACQTMFIL---------------- 1360
            |  |.| |:...|.||:...:|:.|  .|...|:|..|:|...|||||:                
 Frog   517 AVGQLGISYFSIIATVVTTPWTMLS--ALNFSNSLLLILQYLSQTMFIIESMRSIHEEEKEKPGH 579

  Fly  1361 --DASRRQAVSPEH-------------LRKKPGREIVTFMLVVNLAMWAISTLEKSRAESHPIQL 1410
              ::.||.:|...|             |.::..:|:..|:::.|:..|.:...     .:||:.:
 Frog   580 HEESHRRMSVQEMHKAPPSCLDAGHLGLSRRVVKEMAMFLMICNIMCWILGAF-----GAHPLYM 639

  Fly  1411 N-----FYGLWAWTIITHVSMPLAIFYRFHSTVCLCEIWKRA 1447
            |     .||...|..|.::.:||::|||.||...|.|::..|
 Frog   640 NGLERQLYGSGIWLAILNIGLPLSVFYRMHSVGILLEVYLHA 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OtopLcNP_001303575.1 Otopetrin 1015..1434 CDD:281218 106/552 (19%)
otop3NP_001106584.1 Otopetrin 185..667 CDD:281218 105/550 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D243107at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9424
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X278
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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