DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-epsilon and dscamb

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio


Alignment Length:447 Identity:101/447 - (22%)
Similarity:150/447 - (33%) Gaps:106/447 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 NAGNVGGSTLNNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMH------------ 87
            :||:|......||  ..|.....::|:|..|||:..:.|.:.....|.:.|..            
Zfish   489 SAGSVSYQARINV--RGPASIRPMKNVTAIAGRDTYIHCRIIGYPYYSIKWYKDSNLLPFNHRQR 551

  Fly    88 -FEQSAILTVHN-------------------------HVITR----------------------- 103
             ||.:..|.:.|                         ||..:                       
Zfish   552 AFENNGTLKLSNVQNSDEGEYTCYVLVDPEKQIHRSVHVTVKVPPLIQHSDSQSASIGQRVFIPC 616

  Fly   104 --------------------NPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAKTQY 148
                                |..:.||.|..|  .|..|.|:|:.|...|.|.|......|..::
Zfish   617 VVISGDLPMSITWHKDGRPINASLGVTIDNID--FTSSLRISNLSEIHNGSYTCIARNEAAAVEH 679

  Fly   149 GFVKVV-VPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDG------NKIVINKTL 206
            ....:| |||:.:......|.|.  |.:|||.|.|||:|.|||.|....|      ..|.:|...
Zfish   680 SIQLIVKVPPHFEVQPKDQDGIY--GKSVTLNCSAKGNPIPTIVWNHSKGAGVPQFQPIALNSGS 742

  Fly   207 EVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNIT 271
            .|..||..||.::.:.....|.|||..||.|...:||.:.::|....|:...........|....
Zfish   743 RVQLLENGSLLIKHVLEEDAGFYLCKVSNDVGADISKSMYLTVKIPAMITSYPNTTRAEQGHMTE 807

  Fly   272 LECFIEANPTSLNYWTRENDQMITESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKN 336
            :.|...........|.:|:..:..:.|:|............:|  |.|.:....|.|.:.|:|.|
Zfish   808 MSCTAHGEKPIKVRWEKESHIINPDMSRYVVTVKEVGDEVIST--LQILHTVREDSGFFSCIAIN 870

  Fly   337 PRGDMDGNIKLYMSSPPTTQPPPTTTTLR----RTTTTAAEIALDGYINTPLNGNGI 389
            ..|:..|.|:|.:..    :|.|....:|    ||......:..||  |:|:.|..|
Zfish   871 SYGEDKGIIQLIVQD----RPDPPEVEIREVKDRTIALRWTMGFDG--NSPITGYDI 921

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 29/177 (16%)
Ig 69..139 CDD:143165 22/150 (15%)
IG_like 165..249 CDD:214653 32/89 (36%)
IGc2 172..237 CDD:197706 27/70 (39%)
IG_like 267..348 CDD:214653 17/80 (21%)
Ig 270..339 CDD:299845 13/68 (19%)
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653 3/11 (27%)
Ig 424..498 CDD:143165 3/8 (38%)
IG_like 511..592 CDD:214653 14/80 (18%)
IGc2 518..576 CDD:197706 9/57 (16%)
I-set 595..685 CDD:254352 14/91 (15%)
Ig 612..682 CDD:143165 14/71 (20%)
I-set 689..785 CDD:254352 33/97 (34%)
Ig7_DSCAM 706..785 CDD:143211 29/78 (37%)
IG_like 795..883 CDD:214653 18/89 (20%)
Ig 803..890 CDD:299845 19/92 (21%)
FN3 887..980 CDD:238020 11/37 (30%)
FN3 987..1084 CDD:238020
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.