DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and Lsamp

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:323 Identity:100/323 - (30%)
Similarity:152/323 - (47%) Gaps:26/323 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 NVGGSTLNNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVIT 102
            |:...|:..:.....:|....:||||..|....|.|.|::..| ||||::  :|.|:...:...:
  Rat    35 NLSPITIPGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNS-KVAWLN--RSGIIFAGHDKWS 96

  Fly   103 RNPRISVTHDKHDKHR-TWFLHINNVQEEDRGRYMCQINTV-TAKTQYGFVKVVVPPNIDDALTS 165
            .:||:.:    ..:|. .:.|.|..|...|.|.|.|.:.|. ..||...::.|.|||.|.:  .|
  Rat    97 LDPRVEL----EKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISN--IS 155

  Fly   166 SDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLELERISRLHMGAYL 230
            ||:.|.||.||||.|.|.|.|||.|.|:    :...:.:..|.   |.:.||:..|:|...|.|.
  Rat   156 SDVTVNEGSNVTLVCMANGRPEPVITWR----HLTPLGREFEG---EEEYLEILGITREQSGKYE 213

  Fly   231 CIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMIT 295
            |.|:|.|..:..|::||:|::.|.: ...:......|...:|:|...|.|.....|.|: |..|.
  Rat   214 CKAANEVSSADVKQVKVTVNYPPTI-TESKSNEATTGRQASLKCEASAVPAPDFEWYRD-DTRIN 276

  Fly   296 ESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLYMSSPPTTQPP 358
            .::..:.::..|..|      ||:|||....||||.|||.|..|..:.::.|:....||...|
  Rat   277 SANGLEIKSTEGQSS------LTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTVPHP 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 29/97 (30%)
Ig 69..139 CDD:143165 20/70 (29%)
IG_like 165..249 CDD:214653 33/83 (40%)
IGc2 172..237 CDD:197706 25/64 (39%)
IG_like 267..348 CDD:214653 25/80 (31%)
Ig 270..339 CDD:299845 23/68 (34%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 28/96 (29%)
FR1 55..71 CDD:409353 6/15 (40%)
Ig strand A' 56..62 CDD:409353 4/5 (80%)
Ig strand B 64..72 CDD:409353 2/7 (29%)
CDR1 72..76 CDD:409353 1/3 (33%)
FR2 77..84 CDD:409353 5/9 (56%)
Ig strand C 77..83 CDD:409353 5/6 (83%)
CDR2 85..95 CDD:409353 2/9 (22%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 10/38 (26%)
Ig strand D 100..107 CDD:409353 1/10 (10%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 2/8 (25%)
FR4 138..145 CDD:409353 1/6 (17%)
Ig_3 148..218 CDD:404760 31/78 (40%)
Ig strand A' 155..160 CDD:409353 3/4 (75%)
Ig strand B 166..173 CDD:409353 4/6 (67%)
Ig strand C 179..184 CDD:409353 2/8 (25%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 2/5 (40%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 3/7 (43%)
Ig_3 235..311 CDD:404760 24/83 (29%)
Ig strand B 252..256 CDD:409353 1/3 (33%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 2/9 (22%)
Ig strand F 304..309 CDD:409353 3/4 (75%)
Ig strand G 318..321 CDD:409353 0/2 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337164
Domainoid 1 1.000 45 1.000 Domainoid score I11853
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4382
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8971
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X97
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.800

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