DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-epsilon and Ptprq

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:404 Identity:79/404 - (19%)
Similarity:127/404 - (31%) Gaps:159/404 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VALSTDTGSEGNAGN-VGGSTLNNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMH 87
            ||.||:.| .|||.: :...||.......||...|:  .|.|.|.|              ::|  
Mouse  1516 VAASTNAG-YGNASSWISTQTLPGPPDGPPENVRVV--ATSPFGIN--------------ISW-- 1561

  Fly    88 FEQSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAKTQYGFVK 152
             .:.||:|.....:     |.|....:|.....|:..|   ||::   ..:||.:...|:|..|.
Mouse  1562 -NEPAIITGPTFYL-----IDVKSVDNDNFNISFVKSN---EENK---TTEINDLEVFTRYSVVI 1614

  Fly   153 VVVPPNIDDALT----SSDIIVREGDNVTLRCKAKGSP-----------------------EP-- 188
            .....|:..|.|    |:::|:     .||....|..|                       :|  
Mouse  1615 TAFVGNVSGAYTDGKSSAEVII-----TTLESVPKDPPNNMTFQKIPDEVTKFQLSFLPPSQPNG 1674

  Fly   189 ------TIKWKRDDGNKIVINKTLEVHDL----ETDSLELERISRLHMG-----AYLCIASNGVP 238
                  .:.::.||...:      ::|:|    :||:..:..:..|..|     :...|.|.|..
Mouse  1675 NIQVYQALVYREDDPTAV------QIHNLSIIQKTDTSVIAMLEGLKGGHTYNISVYAINSAGAG 1733

  Fly   239 PSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKTE 303
            |.|..|                         ||::....|.|                    ||:
Mouse  1734 PKVQMR-------------------------ITMDIKAPARP--------------------KTK 1753

  Fly   304 TIPGHPSYKATMRLTITNV----------QSSDYG---NYKCVAKNPRGDMDGNI---------- 345
            .||.|   .||.:|.:|:.          .:.|:|   |.:.:........|||:          
Mouse  1754 PIPIH---DATGKLLVTSTTITIRMPICYYNDDHGPIRNVQVLVAEAGAQQDGNVTKWYDAYFNK 1815

  Fly   346 -KLYMSSPPTTQPP 358
             :.|.::.....||
Mouse  1816 ARPYFTNEGFPNPP 1829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 20/95 (21%)
Ig 69..139 CDD:143165 11/69 (16%)
IG_like 165..249 CDD:214653 21/123 (17%)
IGc2 172..237 CDD:197706 15/104 (14%)
IG_like 267..348 CDD:214653 19/104 (18%)
Ig 270..339 CDD:299845 16/81 (20%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020
FN3 308..393 CDD:238020
fn3 399..>441 CDD:365830
FN3 570..654 CDD:238020
fn3 668..744 CDD:365830
FN3 762..850 CDD:238020
fn3 857..934 CDD:365830
FN3 951..1049 CDD:238020
FN3 1056..1137 CDD:238020
FN3 1152..1233 CDD:238020
FN3 1247..1337 CDD:238020
FN3 1342..1421 CDD:238020
FN3 1432..1535 CDD:238020 8/19 (42%)
FN3 1542..1638 CDD:238020 28/130 (22%)
FN3 1645..1734 CDD:238020 13/94 (14%)
UP_III_II 1759..1928 CDD:297589 13/71 (18%)
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.