DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and Robo1

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_017172382.1 Gene:Robo1 / 19876 MGIID:1274781 Length:1687 Species:Mus musculus


Alignment Length:364 Identity:97/364 - (26%)
Similarity:151/364 - (41%) Gaps:68/364 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMC-----------QINTVTAKTQYGFVKVVVP 156
            ::.||::...|        |.|...::.|.|:|:|           ::..:|...:..|||    
Mouse   247 KDERITIRGGK--------LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVK---- 299

  Fly   157 PNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLELERI 221
                   ..|::.|...|:...:|:|:|.|.||::|::|||.  :.....|:.|..|  |::.::
Mouse   300 -------RPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGE--LPKSRYEIRDDHT--LKIRKV 353

  Fly   222 SRLHMGAYLCIASNGV-PPSVSKRIKVSVDFSPMVWIPHQLVG-----IPIGFNITLECFIEANP 280
            :...||:|.|:|.|.| ....|..:.|.|...|    ||.:|.     :.:|..:|.:|....||
Mouse   354 TAGDMGSYTCVAENMVGKAEASATLTVQVGSEP----PHFVVKPRDQVVALGRTVTFQCEATGNP 414

  Fly   281 TSLNYWTRENDQMITESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNI 345
            ....:|.||..|.:..|  |:........|...|..|||||||.||.|.|.|...|..|.:....
Mouse   415 QPAIFWRREGSQNLLFS--YQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIITKA 477

  Fly   346 KLYMSSPPTTQPPPTTTTLRRTTTTAAEIALDGYINTPLNGNGIGIVGEGPT-----NSVIASGK 405
            .|.::.....:|||..    |.......:|:||.:.......|    ...||     :.|:.|.:
Mouse   478 YLEVTDVIADRPPPVI----RQGPVNQTVAVDGTLILSCVATG----SPAPTILWRKDGVLVSTQ 534

  Fly   406 SS-IKYL-SNLNEI------DKSKQKLTGSSPKG-FDWS 435
            .| ||.| |.:.:|      |..:...|.|:|.| ..||
Mouse   535 DSRIKQLESGVLQIRYAKLGDTGRYTCTASTPSGEATWS 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 13/62 (21%)
Ig 69..139 CDD:143165 9/46 (20%)
IG_like 165..249 CDD:214653 26/84 (31%)
IGc2 172..237 CDD:197706 21/64 (33%)
IG_like 267..348 CDD:214653 27/80 (34%)
Ig 270..339 CDD:299845 25/68 (37%)
Robo1XP_017172382.1 Ig1_Robo 100..199 CDD:143317
Ig2_Robo 207..291 CDD:143201 9/51 (18%)
Ig3_Robo 312..380 CDD:143202 22/71 (31%)
Ig4_Robo 401..490 CDD:143203 28/90 (31%)
I-set 491..578 CDD:369462 23/91 (25%)
FN3 597..683 CDD:238020
FN3 720..806 CDD:238020
fn3 814..897 CDD:365830
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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