DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and Ptprf

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_006502927.1 Gene:Ptprf / 19268 MGIID:102695 Length:1924 Species:Mus musculus


Alignment Length:444 Identity:93/444 - (20%)
Similarity:155/444 - (34%) Gaps:113/444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LIASSVALSTDTGSEGNAGNVGGSTLNNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKV 83
            |:.:.|.|....|:.|::              .|.|..|.|:.|..:|......|........::
Mouse    14 LVPALVMLGLMAGAHGDS--------------KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRI 64

  Fly    84 AWMHFEQSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQ-EEDRGRYMC-------QIN 140
            .||...:.          ..:.|..|.  :.|......|.|..:: :.|...|.|       :||
Mouse    65 TWMKKGKK----------VSSQRFEVI--EFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEIN 117

  Fly   141 TVTAKTQY--------GFVKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRD-- 195
            | :||...        ||..:.:.|.:.        :|.:|...|:.|.|.|:|:|.|.|.:|  
Mouse   118 T-SAKLSVLEEDQLPSGFPTIDMGPQLK--------VVEKGRTATMLCAAGGNPDPEISWFKDFL 173

  Fly   196 ----------------DGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASN------GVP 238
                            .|:.|            ..:|::|.......|.|.|:|:|      ..|
Mouse   174 PVDPAASNGRIKQLRSGGSPI------------RGALQIESSEESDQGKYECVATNSAGTRYSAP 226

  Fly   239 PSVSKRI-KVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTRENDQMITESSKYKT 302
            .::..|: :|:..||    ||.....:..|.::.|.|.....|.....|....:::..|......
Mouse   227 ANLYVRVRRVAPRFS----IPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEELTKEDEMPVG 287

  Fly   303 ETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLYMSSPPTTQPPPTTTTLRRT 367
            ..:           |.::||..|  .||.|||.:..|.::...::.:.:.|   .||....:..|
Mouse   288 RNV-----------LELSNVMRS--ANYTCVAISSLGMIEATAQVTVKALP---KPPIDLVVTET 336

  Fly   368 TTTAAEIALDGYINTPLNGNGI---GIVGEGPTNSV--IASGKSSIKYLSNLNE 416
            |.|:..:..|.....|::..||   ....:||...|  :||.:.||..||..:|
Mouse   337 TATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSE 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 21/111 (19%)
Ig 69..139 CDD:143165 11/77 (14%)
IG_like 165..249 CDD:214653 23/108 (21%)
IGc2 172..237 CDD:197706 19/88 (22%)
IG_like 267..348 CDD:214653 16/80 (20%)
Ig 270..339 CDD:299845 14/68 (21%)
PtprfXP_006502927.1 I-set 33..124 CDD:369462 22/103 (21%)
Ig2_RPTP_IIa_LAR_like 152..232 CDD:319301 19/91 (21%)
Ig3_RPTP_IIa_LAR_like 252..320 CDD:143216 16/80 (20%)
FN3 325..414 CDD:238020 20/69 (29%)
FN3 421..513 CDD:238020
FN3 518..607 CDD:238020
FN3 615..709 CDD:238020
FN3 716..822 CDD:238020
FN3 827..916 CDD:238020
FN3 925..1013 CDD:238020
FN3 1022..>1081 CDD:238020
PTP_DSP_cys 1352..1627 CDD:391942
R-PTP-F-2 1629..1919 CDD:350477
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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