DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and sax-3

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_001024990.1 Gene:sax-3 / 180637 WormBaseID:WBGene00004729 Length:1273 Species:Caenorhabditis elegans


Alignment Length:468 Identity:114/468 - (24%)
Similarity:183/468 - (39%) Gaps:101/468 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 STLNNVISEDPEFTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPR 106
            |.|..||.|.|  .||:    |..|....|.|..|. .:.|:.|....|.        |||...:
 Worm    27 SNLAPVIIEHP--IDVV----VSRGSPATLNCGAKP-STAKITWYKDGQP--------VITNKEQ 76

  Fly   107 ISVTHDKHDKHRTWFLHIN---NVQEEDRGRYMCQINTVTAKTQYGFVKVVVPPNIDDALTSSDI 168
            ::......|....:.|.:|   |.::.|.|.|.|     .|..::|.|| ....::..|:...|.
 Worm    77 VNSHRIVLDTGSLFLLKVNSGKNGKDSDAGAYYC-----VASNEHGEVK-SNEGSLKLAMLREDF 135

  Fly   169 IVRE-------GDNVTLRCK-AKGSPEPTIKWKRDDGNKIVINKTLEVHD-----LETD-SLELE 219
            .||.       |:...|.|. .:|.|||.:.|::||       |.|.:.|     |.:| :|.::
 Worm   136 RVRPRTVQALGGEMAVLECSPPRGFPEPVVSWRKDD-------KELRIQDMPRYTLHSDGNLIID 193

  Fly   220 RISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLN 284
            .:.|...|.|.|:|:|.|...||...::||...|......:.:.:.:|..:..:|.:..:|....
 Worm   194 PVDRSDSGTYQCVANNMVGERVSNPARLSVFEKPKFEQEPKDMTVDVGAAVLFDCRVTGDPQPQI 258

  Fly   285 YWTRENDQMITESSKYKTETIPGHPSY--KATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKL 347
            .|.|:|:.|            |...:|  |....|.|..||.||.|.|.|.|:||.|.::.:..|
 Worm   259 TWKRKNEPM------------PVTRAYIAKDNRGLRIERVQPSDEGEYVCYARNPAGTLEASAHL 311

  Fly   348 YMSSPPTTQPPPTTTTLRRTTTTAAEIALDG--------------------YIN----TPLNGNG 388
            .:.:||:.|..|...::....|...|..|.|                    |::    |.::..|
 Worm   312 RVQAPPSFQTKPADQSVPAGGTATFECTLVGQPSPAYFWSKEGQQDLLFPSYVSADGRTKVSPTG 376

  Fly   389 ------IGIVGEGPTNSVIASGKSSIKYLSNLNEIDKSKQKLTGSSPKGFDWSKGKSSGSHGN-- 445
                  :..|.||   :.:.:|.:|..     :.:.|:..|:|..:..|...:|...:..||:  
 Worm   377 TLTIEEVRQVDEG---AYVCAGMNSAG-----SSLSKAALKVTTKAVTGNTPAKPPPTIEHGHQN 433

  Fly   446 --LMASSWPLICC 456
              ||..|..::.|
 Worm   434 QTLMVGSSAILPC 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 23/98 (23%)
Ig 69..139 CDD:143165 17/72 (24%)
IG_like 165..249 CDD:214653 28/97 (29%)
IGc2 172..237 CDD:197706 22/78 (28%)
IG_like 267..348 CDD:214653 23/82 (28%)
Ig 270..339 CDD:299845 21/70 (30%)
sax-3NP_001024990.1 Ig 30..129 CDD:299845 29/119 (24%)
I-set 31..121 CDD:254352 29/110 (26%)
I-set 135..223 CDD:254352 27/94 (29%)
Ig2_Robo 137..223 CDD:143201 27/92 (29%)
I-set 227..313 CDD:254352 25/97 (26%)
Ig 244..313 CDD:299845 23/80 (29%)
I-set 317..410 CDD:254352 16/100 (16%)
Ig 331..411 CDD:299845 14/87 (16%)
Ig 424..512 CDD:299845 6/23 (26%)
I-set 432..512 CDD:254352 4/15 (27%)
FN3 531..624 CDD:238020
FN3 659..747 CDD:238020
FN3 755..836 CDD:214495
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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