DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and rig-4

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:473 Identity:91/473 - (19%)
Similarity:154/473 - (32%) Gaps:157/473 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 NAGNVGGS------TLNN---VISEDPEFT----------------------------------D 56
            |...:.||      ||||   :||....||                                  |
 Worm   264 NGQQISGSEVGMTTTLNNRRLIISNPSSFTRGEHKLECRADAAMGRTSDQKSAYMTFISRPILKD 328

  Fly    57 VIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQSAILTVHNHVITRNPRISVTHDKHDKHRTWF 121
            :...|....|.::.|.||||...|..:.|  ::...::|.....:|                   
 Worm   329 LPNEIQKTVGSSLSLKCSVKKKSSMDIKW--YKNGLMMTTQRGKLT------------------- 372

  Fly   122 LHINNVQEEDRGRYMCQI--------------------NTVTAKTQYGF-----VKVVVPPN--- 158
              |:.::::|.|.|.|:.                    ...|..::.|.     :.:..||.   
 Worm   373 --IDRIKQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMSEDGMSLEEEISMETPPPRKL 435

  Fly   159 --IDDA--------------------LTSSDIIVREG-DNVTLRCKAKGSPEPTIKWKRDDGNKI 200
              .|::                    .|..|:.|..| |.:.:.|.|.|||.|.|.|.. :|::|
 Worm   436 KFFDNSKSQEQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLL-NGHEI 499

  Fly   201 VINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIP 265
            ..:..  .:||..|.|.:..|.:...|.|.|..| |.....:..::|:.| |.:.:.|.....: 
 Worm   500 QTDNV--KYDLTNDGLAIHDIRKSDEGEYTCEIS-GSNVKATANVQVNGD-SLIEYGPADQKSL- 559

  Fly   266 IGFNITLECFIE---ANPTSLNYWTRENDQMITESSKYKTETIPGHPSYKATMR----LTITNVQ 323
            ||.|:...|.:.   ....|:.::.  ||.::         .:.|:...:.:..    |.|..|.
 Worm   560 IGTNVEFSCEVAKEYVRKASVEWYL--NDVLL---------PVNGNSGLRISRNRKGSLIIRQVG 613

  Fly   324 SSDYGNYKCVAKNPRGDMDGNIKLYMSSPPTTQPPPTTTTLR---RTTTTAAEI------ALDGY 379
            ..:.|.|:|     |..:||..:...:.....:.|.....:|   ...|..|::      ..|| 
 Worm   614 PDNTGEYRC-----RVTVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDG- 672

  Fly   380 INTPLNGNGIGIVGEGPT 397
             |.|:..:.|.:...|||
 Worm   673 -NEPIIKHAIEMRTMGPT 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 18/120 (15%)
Ig 69..139 CDD:143165 14/69 (20%)
IG_like 165..249 CDD:214653 25/84 (30%)
IGc2 172..237 CDD:197706 21/65 (32%)
IG_like 267..348 CDD:214653 16/87 (18%)
Ig 270..339 CDD:299845 11/75 (15%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 16/94 (17%)
IGc2 338..393 CDD:197706 15/77 (19%)
I-set 459..543 CDD:254352 25/87 (29%)
IGc2 478..534 CDD:197706 20/59 (34%)
IG_like 553..639 CDD:214653 18/102 (18%)
Ig 564..635 CDD:143165 14/86 (16%)
FN3 643..747 CDD:238020 12/49 (24%)
FN3 756..850 CDD:238020
FN3 858..954 CDD:238020
FN3 959..1042 CDD:238020
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 1258..1356 CDD:238020
FN3 1361..1453 CDD:238020
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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