DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and Dscam

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus


Alignment Length:505 Identity:117/505 - (23%)
Similarity:163/505 - (32%) Gaps:192/505 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SEGNA-------------GNVGGSTLNN----------VISEDPEFTDVIENITVPAGRNVKLAC 73
            ||||.             |.|...|.||          :....|.....::|||..|||:..:.|
Mouse   461 SEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGRDTYIHC 525

  Fly    74 SVKNLGSYKVAWMHFEQSAILTV-HNHVITRNPRISVTHDKHDKHRTWFLHINNVQEE-DRGRYM 136
            .|.....|.:.|  ::.:.:|.. |..|...|              ...|.:::||:| |.|.|.
Mouse   526 RVIGYPYYSIKW--YKNANLLPFNHRQVAFEN--------------NGTLKLSDVQKEVDEGEYT 574

  Fly   137 C------QINTVTAKTQYGFVKVVVPP-------------------------------------- 157
            |      |::|    :|...|.|.|||                                      
Mouse   575 CNVLVQPQLST----SQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLPITITWQKDGR 635

  Fly   158 -----------NIDDALTS-----------------------------SDIIVR----------- 171
                       |||  .||                             |.:|||           
Mouse   636 PIPASLGVTIDNID--FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRD 698

  Fly   172 ----EGDNVTLRCKAKGSPEPTIKWKRDDG------NKIVINKTLEVHDLETDSLELERISRLHM 226
                .|..|.|.|.|:|.|.|||.||...|      ..|.:|..::|  |...||.::.:.....
Mouse   699 QDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQV--LSNGSLLIKHVVEEDS 761

  Fly   227 GAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITL---------ECFIEANPTS 282
            |.|||..||.|...|||.:.::|.      ||..:...|   |.||         .|........
Mouse   762 GYYLCKVSNDVGADVSKSMYLTVK------IPAMITSYP---NTTLATQGQRKEMSCTAHGEKPI 817

  Fly   283 LNYWTRENDQMITESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKL 347
            :..|.:|:..:..|.::|...|........:|:::..|  ...|.|.:.|.|.|..|:..|.|:|
Mouse   818 IVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPT--VREDSGFFSCHAINSYGEDRGIIQL 880

  Fly   348 YMSSPPTTQPP--------PTTTTLRRTTTTAAEIALDGYINTPLNGNGI 389
            .:..||  .||        ..|.|||.|      :..||  |:|:.|..|
Mouse   881 TVQEPP--DPPEIEIKDVKARTITLRWT------MGFDG--NSPITGYDI 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 27/103 (26%)
Ig 69..139 CDD:143165 16/77 (21%)
IG_like 165..249 CDD:214653 34/133 (26%)
IGc2 172..237 CDD:197706 25/70 (36%)
IG_like 267..348 CDD:214653 19/89 (21%)
Ig 270..339 CDD:299845 15/77 (19%)
DscamXP_006522949.1 Ig 15..115 CDD:386229
IGc2 239..300 CDD:197706
IG 320..400 CDD:214652
Ig_3 410..488 CDD:372822 7/26 (27%)
IGc2 518..575 CDD:197706 17/72 (24%)
Ig 596..686 CDD:386229 8/91 (9%)
Ig_DSCAM 707..784 CDD:143211 28/78 (36%)
Ig 802..889 CDD:386229 19/90 (21%)
FN3 885..978 CDD:238020 15/46 (33%)
FN3 986..1083 CDD:238020
FN3 1091..1184 CDD:238020
FN3 1189..1278 CDD:238020
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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