DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and col20a1

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_031750574.1 Gene:col20a1 / 101731976 XenbaseID:XB-GENE-6047460 Length:1361 Species:Xenopus tropicalis


Alignment Length:470 Identity:87/470 - (18%)
Similarity:146/470 - (31%) Gaps:177/470 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 RISVTHDKHDKHRTWFLHINNVQEE-----DRGRYMCQINTVT-----------------AKTQY 148
            ||..:....:.|..|.|:....:.|     .|.:|... ||.|                 |:...
 Frog   257 RIGASQYSGEPHTEWDLNAYGSKAEVLEAVKRLKYRGG-NTFTGLALTHVLEENLRAAAGAREHA 320

  Fly   149 GFVKVVVP--PNIDDALTSSDII-----------VREGDNVTLRCKAKGSPEPTI---------- 190
            |.|.|::.  .:.|||::.:.::           |:..|.|.||..|.|.|:.|:          
 Frog   321 GKVLVLLTDGKSQDDAISVAQMLKEAGIYIFTIGVKNADEVELREMASGPPDLTVHIVADF
PLLS 385

  Fly   191 --------------KWKRDDGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSV 241
                          |.||.:            .:|...|:.|:.::..|......:.|.    ..
 Frog   386 PLVGQVARALCVRLKVKRRE------------EELGAHSVALQDLADPHPSPTHLVVSE----VT 434

  Fly   242 SKRIKVSVDFSPMVWIP--HQ-----LVGIPIGFNITLECFIE--ANPTSLNYWTRENDQMITES 297
            :|.:::|       |.|  ||     :|..|.......|..::  |:.:.|:..|...|.:::..
 Frog   435 AKSMRLS-------WTPPHHQVRKYRIVYYPSRGGTPQEVVLDGAASTSVLSNLTSRTDYLVSVF 492

  Fly   298 SKYK----------TETIP--------------------GHPSYKATMRLTITNVQSSDYGNYKC 332
            ..|.          |.|:|                    .|.|.:|...|.:...||..      
 Frog   493 PIYGSGVGSGLRGITSTLPLPAPRSLEAEQVTDTTIGLRWHASEEAAQYLVLCAAQSDP------ 551

  Fly   333 VAKNPRGDMDG--------------NIKLY------MSSP----PTTQPPPTTTTLRRTTTTAAE 373
            |.|.....:.|              ::.:|      ||.|    ..|:||.....||.:....:.
 Frog   552 VEKASEVKVAGTEVLLSGLAPSTHYSLTVYAVSGDEMSDPSFLQQITEPPVPPRDLRFSEVAHSS 616

  Fly   374 IAL-------DGYIN----TPLNGNGIGIVGEGPTNSVIASGKSSIKYLSNLNEIDKSKQKLTGS 427
            :|:       ||..:    :|..|:      .|.....:..|.||:...|.|::...| ..:|| 
 Frog   617 VAVHWQSPSSDGKPHRVSYSPAPGS------SGRQEEEVPGGSSSVTLKSLLSQTFYS-VTVTG- 673

  Fly   428 SPKGFDWSKGKSSGS 442
                  |..|..:|:
 Frog   674 ------WHGGAVTGN 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 15/70 (21%)
Ig 69..139 CDD:143165 8/37 (22%)
IG_like 165..249 CDD:214653 18/118 (15%)
IGc2 172..237 CDD:197706 16/88 (18%)
IG_like 267..348 CDD:214653 18/126 (14%)
Ig 270..339 CDD:299845 17/100 (17%)
col20a1XP_031750574.1 fn3 27..99 CDD:394996
vWA_collagen_alphaI-XII-like 219..381 CDD:238759 27/124 (22%)
FN3 425..500 CDD:238020 15/85 (18%)
fn3 513..592 CDD:394996 12/84 (14%)
FN3 601..>672 CDD:238020 15/77 (19%)
fn3 689..764 CDD:394996
LamG 813..1007 CDD:419873
Collagen 1061..1116 CDD:396114
Collagen 1126..1194 CDD:396114
Collagen 1294..>1341 CDD:396114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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