DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and chl1b

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_017212175.2 Gene:chl1b / 100318566 ZFINID:ZDB-GENE-091105-1 Length:1294 Species:Danio rerio


Alignment Length:479 Identity:99/479 - (20%)
Similarity:175/479 - (36%) Gaps:104/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LIASSVALSTDTGSEGNAGNVGGSTLNNVISEDPEF---TDVIENITVPAGRNVKLACSVKNLGS 80
            ::..|..|..|:.|....|..     |:::...|..   |.:..:..:..|.:::|.|..:...:
Zfish   231 MVVKSNKLMKDSSSGSGRGYA-----NSLLERKPSLLAPTGMESHTRLVKGEDLQLECIAEGFPT 290

  Fly    81 YKVAWMHFEQSAILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAK 145
            .||.|:...       .|.:..|     |..:.|.|    .|.:..|.|||.|:|||:     ||
Zfish   291 PKVEWVKIG-------FNKLPER-----VVVESHGK----LLTVEMVNEEDEGKYMCR-----AK 334

  Fly   146 TQYG------FVKVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRD--------- 195
            ..:|      .|.|..||..:  :.....:|..|.:|.::|..||:|:||:.|:.:         
Zfish   335 NPHGEVVHHFHVTVEEPPEFE--IEPQSQLVTIGADVLIKCVVKGNPQPTVGWRVNGRPLNEVPT 397

  Fly   196 DGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASNGVPPSVSKRIKVSVDFSPMVWIPHQ 260
            ...||:.:.|:.:|:...:          :...|.|.|:|.....::....:.::..|::...:.
Zfish   398 SNRKILKDGTISIHNANPE----------NSAVYQCEATNKHGTILANANIMIMNIQPLILTENN 452

  Fly   261 LVGIPI-GFNITLECFIEANPTSLNYWTRENDQMITESSKYKTETIPGHPSYKATMRLTITNVQS 324
            |..:.: |.::.:.|.:.::|.|...|::.:.....|..::   |:..:.|      |.|.||..
Zfish   453 LQYMAVEGKSVVMHCKVFSSPASSITWSKADSANAVEGERF---TVHQNGS------LEIHNVMK 508

  Fly   325 SDYGNYKCVAKNPRGDMDGNIKLYMSSPPTTQPPPTTTTLRRTTTTAAE---------------- 373
            .|.|.|.|.|:|..|.:.....|.:..|.....||....:...||....                
Zfish   509 EDMGEYSCFAQNTEGKVAIAATLEVKDPTRIVDPPRDLRVLAGTTIQFSCQPEFDPSFGDDFEVL 573

  Fly   374 -----IALDG--------------YINTPLNGNGI-GIVGEGPTNSVIASGKSSIKYLSNLNEID 418
                 |||:|              .||......|. ..|...|.:..:|..:.|:..:.:..| |
Zfish   574 WEKDGIALNGSEDGRYILEDGVLEIINVSFGDQGFYACVARTPVDQDVAVAQLSVVDVPDPPE-D 637

  Fly   419 KSKQKLTGSSPKGFDWSKGKSSGS 442
            ....:..|.|.| ..|:.|....|
Zfish   638 VILSEHNGRSVK-LQWTPGDDHNS 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653 25/101 (25%)
Ig 69..139 CDD:143165 19/69 (28%)
IG_like 165..249 CDD:214653 18/92 (20%)
IGc2 172..237 CDD:197706 17/73 (23%)
IG_like 267..348 CDD:214653 19/80 (24%)
Ig 270..339 CDD:299845 17/68 (25%)
chl1bXP_017212175.2 Ig 61..135 CDD:325142
Ig 138..231 CDD:325142 99/479 (21%)
Ig 279..348 CDD:325142 23/89 (26%)
Ig 366..438 CDD:325142 17/81 (21%)
IG 454..533 CDD:214652 20/87 (23%)
I-set 538..628 CDD:333254 14/89 (16%)
FN3 632..722 CDD:238020 8/31 (26%)
FN3 734..815 CDD:238020
FN3 832..931 CDD:238020
fn3 942..1022 CDD:306538
FN3 1070..1142 CDD:214495
Bravo_FIGEY 1196..1279 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12231
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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