DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-epsilon and lingo4a

DIOPT Version :9

Sequence 1:NP_001137799.1 Gene:DIP-epsilon / 7354433 FlyBaseID:FBgn0259714 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_001076447.1 Gene:lingo4a / 100005227 ZFINID:ZDB-GENE-060503-275 Length:618 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-epsilonNP_001137799.1 IG_like 59..155 CDD:214653
Ig 69..139 CDD:143165
IG_like 165..249 CDD:214653
IGc2 172..237 CDD:197706
IG_like 267..348 CDD:214653
Ig 270..339 CDD:299845
lingo4aNP_001076447.1 LRRNT 41..70 CDD:214470
leucine-rich repeat 52..72 CDD:275380
leucine-rich repeat 73..96 CDD:275380
LRR_RI 88..380 CDD:238064
LRR_8 95..155 CDD:290566
leucine-rich repeat 97..120 CDD:275380
leucine-rich repeat 121..144 CDD:275380
leucine-rich repeat 145..168 CDD:275380
leucine-rich repeat 169..192 CDD:275380
LRR_8 191..250 CDD:290566
leucine-rich repeat 193..216 CDD:275380
leucine-rich repeat 217..240 CDD:275380
leucine-rich repeat 241..288 CDD:275380
LRR_8 264..323 CDD:290566
leucine-rich repeat 289..310 CDD:275380
LRR_8 312..371 CDD:290566
leucine-rich repeat 313..336 CDD:275380
leucine-rich repeat 337..356 CDD:275380
I-set 428..512 CDD:254352
Ig 439..512 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I10955
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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