DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42300 and nsmce2

DIOPT Version :10

Sequence 1:NP_727865.2 Gene:CG42300 / 7354426 FlyBaseID:FBgn0259196 Length:181 Species:Drosophila melanogaster
Sequence 2:NP_001122190.1 Gene:nsmce2 / 564644 ZFINID:ZDB-GENE-081022-128 Length:230 Species:Danio rerio


Alignment Length:171 Identity:45/171 - (26%)
Similarity:71/171 - (41%) Gaps:49/171 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FKEMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERPEAVEQMRIDVNNSLEDTNMNAVESEAQ 77
            |.|:...||:|.       .:|.|..:...|.|.|...:|                .|..|:|.:
Zfish    96 FTELIAGVSDSD-------LRNHSKVVAFKETVRKYAMQA----------------QNPAENEEE 137

  Fly    78 KNIAGLDEDLIMEDFGVEVVPFHDPWSKLLIKHPVRNKRCGHIYDRETVLMII----KDNIGILC 138
            :    ||||:.:..   ....|..|.:::.:.:|::||:|.|.||:|.||.:|    |:.....|
Zfish   138 E----LDEDIAVTQ---SQTNFICPLTQVEMVNPMKNKKCNHYYDQEAVLEMIKNKHKNRKKFRC 195

  Fly   139 PVRDCPNLSDIKLEHLVKDPDVEQEL--------QKRKSDK 171
            |...|.|..       |::.|:|.:|        |||:|.|
Zfish   196 PKVGCGNAD-------VQESDLELDLIMKRMIQNQKRQSGK 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42300NP_727865.2 SPL-RING_NSE2 102..166 CDD:438313 21/75 (28%)
nsmce2NP_001122190.1 SPL-RING_NSE2 152..222 CDD:438313 22/76 (29%)

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