DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7f and grik4

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:530 Identity:105/530 - (19%)
Similarity:195/530 - (36%) Gaps:136/530 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 WLH-CNVMIQTAQVEVLVYT-YYPYTADACQKAYPIPV--NTFDGRK----WKASQ--MFPDKLS 222
            |.| .::|.....||:...| :..:.:...:..|.:.:  |:.||.:    |.:.|  ....||.
Zfish   341 WEHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALRIMQNSRDGLRQIGQWHSEQGLSMERKLP 405

  Fly   223 QMH------GCPLTVLTWHQPPFVELVWDPKHNRSRGS----GFEIQLVEHLARRMNFSLELVNI 277
            .::      ...||:.|..:.|:|.|  ...|....|:    ||.:.:::.||..:.|.   ..|
Zfish   406 SLNVTDTLFNTTLTITTILENPYVML--RANHQELEGNDRYEGFCVDMLKELADILKFK---YRI 465

  Fly   278 ALLRPNAYRL--AEGSSEGPIEKLLQRNVNISMGYFRKTARRNQLL--TTPMSYYSANLVAVLQL 338
            .|:....|.:  |.|:..|.:.:|:.|..::::.....||.|.:::  :.|......:::..:.:
Zfish   466 RLVGDGVYGVPGANGTWTGMVGELISRKADLAVAALTITAEREKVIDFSKPFMTLGISIMYRVHI 530

  Fly   339 ERYRIGSLALLVFPFELSVWMLLLLALLIHLGIHLPSAR-------------RG------NEEDG 384
            .| |.|..:.| .||...||:.:|||.|....:....||             :|      |:...
Zfish   531 GR-RPGYFSFL-DPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYNPHPCLKGRCSLLINQYSL 593

  Fly   385 G-------GGLQVVALLLGAALARLPRSWRHRFIAAHWLWA-SIPLRISYQSLLFHLIRLQLYNT 441
            |       ||.    :..|:.:|  ||:...|.::..| || ::.:..||.:.|...:.:|....
Zfish   594 GNSFWFPVGGF----MQQGSTIA--PRALSTRCVSGVW-WAFTLIIISSYTANLAAFLTVQRMEV 651

  Fly   442 PSFSLDQLLAEG---------------FQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVL 491
            |..|:|.|..:.               ||.......||:                      |:.:
Zfish   652 PIESVDDLADQTAIEYGTMHGGSTMTFFQNSRYQTYQRM----------------------WNFM 694

  Fly   492 NVLTRNRNRKIFAVANQDVTLSFLHSSAHPNAFHVVKQPVNVEYA------------------GM 538
                .::...:|..:.::.....|:|    |..::::..:|..|.                  |:
Zfish   695 ----YSKQPSVFVKSTEEGIARVLNS----NYAYLLESTMNEYYRQRNCNLTQIGGLLDTKGYGI 751

  Fly   539 YMPKHSFLYEKMDDDIRRLDASGFIHAWRRASF-ASVHRKEQVHMTSRRYINHAKLSGIYMVMAG 602
            .||..|...::.|..|.||.....:...:|..: .....||:.|..  :.:....:.||::|   
Zfish   752 GMPLGSVYRDEFDLAILRLQEENRLEILKRKWWDGGKCPKEEDHRA--KGLGMENIGGIFVV--- 811

  Fly   603 LYLLAGLLFA 612
              |:.|||.|
Zfish   812 --LVCGLLVA 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 29/134 (22%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 12/58 (21%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 77/403 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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