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Protein Alignment Ir7f and Grik2

DIOPT Version :9

Sequence 1:	NP_001138177.1	Gene:	Ir7f / 7354418	FlyBaseID:	FBgn0259188	Length:	621	Species:	Drosophila melanogaster
Sequence 2:	NP_062182.1	Gene:	Grik2 / 54257	RGDID:	2733	Length:	908	Species:	Rattus norvegicus

Alignment Length:	599	Identity:	98/599 - (16%)
Similarity:	207/599 - (34%)	Gaps:	133/599 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly    82 ILMDSWRMVAVQLLRIRPDLVVNPVP---------GRKRVSLLMVDSYQGLLDTNITASNANFDD 137
            ::.|:..:|:|.:.:. |.:.|:.:.         |.:.:||:....::||.. .||.:..|...
  Rat   322 LMYDAVHVVSVAVQQF-PQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTG-RITFNKTNGLR 384

  Fly   138 PDYYFIFLQARDHLIPKELQLILDHCLAHFWLHCNVMIQTAQVEVLVYTYYPYTADACQKAYPIP 202
            .|:....:..::..:.|                             :.|:.|.:.
  Rat   385 TDFDLDVISLKEEGLEK-----------------------------IGTWDPASG---------- 410

  Fly   203 VNTFDGRKWKASQMFPDKLSQMHGCPLTVLTWHQPPFV--ELVWDPKHNRSRGSGFEIQLVEHLA 265
            :|..:.:|.|.:.: .|.||..   .|.|.|..:.|:|  :....|.:...|..|:.|.|:..|:
  Rat   411 LNMTESQKGKPANI-TDSLSNR---SLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELS 471

  Fly   266 RRMNFSLELVNIALLRPNAYRLAE---GSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSY 327
            ..:.|:.|   |.|:....|...:   |...|.:.:|:....::::.....|..|.:::.....:
  Rat   472 TILGFTYE---IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPF 533

  Fly   328 YSANLVAVLQLERYRIGSLALLVFPFELSVWMLLLLALLIHLGIHLPSARRG-----NEEDGGGG 387
            .:..:..:.:........:...:.|....:||.:|||.|....:....||..     |.......
  Rat   534 MTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARFSPYEWYNPHPCNPD 598

  Fly   388 LQVV----ALL------LGAALAR----LPRSWRHRFIAAHWLWASIPLRISYQSLLFHLIRLQL 438
            ..||    .||      :||.:.:    :|::...|.:...|.:.::.:..||.:.|...:.::.
  Rat   599 SDVVENNFTLLNSFWFGVGALMRQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVER 663

  Fly   439 YNTPSFSLDQLLAE---GFQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVLNVLTRNRNR 500
            ..:|..|.|.|..:   .:..:....|.....:           ..:.|   :|.:.....:|.:
  Rat   664 MESPIDSADDLAKQTKIEYGAVEDGATMTFFKK-----------SKIST---YDKMWAFMSSRRQ 714

  Fly   501 KIFAVANQDVTLSFLHSSAHPNAFHVVKQPVNVEYA-------------------GMYMPKHSFL 546
            .:...:|::.....|.|.     :..:.:...:|:.                   |:..|..|..
  Rat   715 SVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPY 774

  Fly   547 YEKMDDDIRRLDASGFIHA-----WRRASFASVHRKEQVHMTSRRYINHAKLSGIYMVMAGLYLL 606
            .:|:...|.:|...|.:|.     ||.........||      ...:....:.||::|:|...:|
  Rat   775 RDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESKE------ASALGVQNIGGIFIVLAAGLVL 833

  Fly   607 AGLLFAGEVLLRQR 620
            :..:..||.|.:.:
  Rat   834 SVFVAVGEFLYKSK 847

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.