DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7f and gria1b

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:558 Identity:92/558 - (16%)
Similarity:191/558 - (34%) Gaps:150/558 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SSGSGYSIYKSYLENS----------RIDMQGEDANLYVARAL------RLVIENVLAQLSTTL- 61
            ||.||.::.:..|:.:          ..|...|.|.|...:.|      :::::..|.:|::.| 
Zfish   149 SSDSGLTVLQKILDTAAEKTWQVTSINFDTLTEAAFLKAIQDLDNKKEFKIILDCELERLNSILN 213

  Fly    62 VVTISTRHLGTAHWFEYMMNIL---MDSWR-----MVAVQLLRIRPDLVVNPVPGRKRVSLLMVD 118
            ::....::|...|:....:..|   :..:|     :...||:.     ..||...|.....|..|
Zfish   214 LIAAQKKNLKNYHYILANLGFLDLNLTEFRKGGANVTGFQLMN-----YTNPTVSRTIQDWLEFD 273

  Fly   119 S-----------YQGLLD-TNITASNANFDDPDYYFIFLQARDHLIPKELQLILDHCLAH---FW 168
            |           |.|.|. ..:|.....|.:.....|.:..|.:         ...|||:   .|
Zfish   274 SKDLKSPKRRLKYTGALTYDGVTVMATAFQNLRKQRIDISRRGN---------AGECLANPPAPW 329

  Fly   169 ---LHCNVMIQTAQVEVLV----------YTYYPYTADACQKAYPIPVNTFDGR-KWKASQMFPD 219
               :.....:|..|.|.|.          .|.:..:......:.|..|..::.| |:.::..:.:
Zfish   330 GQGIDIQRALQQVQFEGLTGHVQFNDKGHRTNFTVSVMEFGPSGPKKVGYWNQREKYVSTATYSN 394

  Fly   220 KLSQMHGC---PLTVLTWHQPPFV-------ELVWDPKHNRSRGSGFEIQLVEHLARRMNFS--L 272
            .|::..|.   ...|.|..:.|:|       :||.:.|:     .|:.::|...:|:.:.:|  |
Zfish   395 MLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLVGNDKY-----EGYCVELAAEIAKHVGYSYRL 454

  Fly   273 ELVNIALLRPNAYRLAEGSS---EGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANL-V 333
            |||.     ...|...:..:   .|.:.:|:....::::.....|..|.:::.....:.|..: :
Zfish   455 ELVG-----DGKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVIDFSKPFMSLGISI 514

  Fly   334 AVLQLERYRIGSLALLVFPFELSVWMLLLLALLIHLGIHL------------------------- 373
            .:.:..:.:.|..:.| .|....:||.::.|   ::|:.:                         
Zfish   515 MIKKPTKSKPGVFSFL-DPLAYEIWMCIVFA---YIGVSVVLFLVSRFSPYEWHADDEEETADQQ 575

  Fly   374 -------------PSARRGNEEDGG----------GGLQVVALLLGAALAR----LPRSWRHRFI 411
                         |:..:...|:..          |....:...|||.:.:    .|||...|.:
Zfish   576 NQNQPPSPEPNQSPNQSQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIV 640

  Fly   412 AAHWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQL 449
            ...|.:.::.:..||.:.|...:.::...:|..|.:.|
Zfish   641 GGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 24/139 (17%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 45/251 (18%)
ANF_receptor 41..368 CDD:279440 41/232 (18%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 45/289 (16%)
Lig_chan 536..842 CDD:278489 21/146 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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