DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and Nmdar2

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:438 Identity:83/438 - (18%)
Similarity:145/438 - (33%) Gaps:124/438 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 SGFEIQLVEHLARRMNFSLELVNIALLRPNAYRLAEGSSEGPIEKLLQRNVNISMGYFRKTARRN 318
            |||.|.|:|..|..:.|:.|||.:...:...  |..|...|.|..|:.|..::.:........|.
  Fly   564 SGFCIDLLEKFAEELGFTYELVRVEDGKWGT--LENGKWNGLIADLVNRKTDMVLTSLMINTERE 626

  Fly   319 QLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWML----------------------- 360
            .::.....:.... :|::..:|..|.|....:.||:.:.|||                       
  Fly   627 AVVDFSEPFMETG-IAIVVAKRTGIISPTAFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSG 690

  Fly   361 ------------------------LLLALLIHLGIHLPSARRGNEEDGGGGLQVVALLLGAALAR 401
                                    |:.|:|....:|:.|                          
  Fly   691 YDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDS-------------------------- 729

  Fly   402 LPRSWRHRFIAAHWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEGFQGICTANTQRLL 466
             ||.:..||:...|             .||.::.|.:| |.:.:...:..|.|......|..|| 
  Fly   730 -PRGFTSRFMTNVW-------------ALFAVVFLAIY-TANLAAFMITREEFHEFSGLNDSRL- 778

  Fly   467 LEMPQLARDPDSIQSVDTPFD---------WDVLNVLTRNRNRK-----IFAVANQDVTLSFLHS 517
              :...:..| |.:....|:.         ::|::...|..|:.     :.||.|.::. ||::.
  Fly   779 --VHPFSHKP-SFKFGTIPYSHTDSTIHKYFNVMHNYMRQYNKTSVADGVAAVLNGNLD-SFIYD 839

  Fly   518 SAHPNAFHVVKQ-------PVNVEYA----GMYMPKHSFLYEKMDDDIRRLDASGFIHAWRRASF 571
            ....:  ::|.|       .|...||    |:...::|...:..:..:....|:|.:...||...
  Fly   840 GTVLD--YLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLERLRRYWM 902

  Fly   572 ASVHRK-EQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFAGEVLLR 618
            ....|. :|.|.:|........||...::|||:.|.|.||....|..:
  Fly   903 TGTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVYFK 950

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 24/103 (23%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 69/394 (18%)
Lig_chan 665..928 CDD:278489 51/310 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463091
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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