DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and Grik5

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:700 Identity:132/700 - (18%)
Similarity:236/700 - (33%) Gaps:214/700 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 IDMQGEDANLYVARALRLVIENVLAQ-LSTTL---------VVTISTRHLG-----TAHWF--EY 78
            ||.....::|.:.:|..|.:.:...: :.||:         :|..|:..||     |:|.|  |:
  Rat   216 IDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEF 280

  Fly    79 MMNILMDSWR-------------------------MVAVQLLRIRPDLVVNPVP---------GR 109
            :.::.| |||                         :.||:.|....::.|.|:.         |.
  Rat   281 VRSLNM-SWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGT 344

  Fly   110 KRVSLLMVDSYQGLLDTNITASNANFDDPDYYFIFLQARDHLIPKELQLILDHCLAHFWLHCNVM 174
            ..::.|.:..|.||  |.....|:.....:|..       .::.|..|   .|.....|.....:
  Rat   345 SLMNYLRMVEYDGL--TGRVEFNSKGQRTNYTL-------RILEKSRQ---GHREIGVWYSNRTL 397

  Fly   175 IQTAQVEVLVYTYYPYTADACQKAYPIPVNTFDGRKWKASQMFPDKLSQMHGCPLTVLTWHQPPF 239
            ...|..                    :.:|        .||...:|       .|.|.|..:.|:
  Rat   398 AMNATT--------------------LDIN--------LSQTLANK-------TLVVTTILENPY 427

  Fly   240 VELVWDPKHNRSRGS----GFEIQLVEHLAR--RMNFSLELVNIALL---RPNAYRLAEGSSEGP 295
            |  :..|......|:    ||.:.::..||.  |..:.|.||...|.   .||      ||..|.
  Rat   428 V--MRRPNFQALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDGLYGAPEPN------GSWTGM 484

  Fly   296 IEKLLQR-NVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWM 359
            :.:|:.| ..::::..|..||.|.:::.....:.:..:..:.::...|.......:.||..:||:
  Rat   485 VGELINRQKADLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWL 549

  Fly   360 LLLLALL-----IHLGIHL---------PSARR-----------GNE--EDGGGGLQVVALLLGA 397
            .:|||.|     :.|...|         |..|.           ||.  ...||.:|     .|:
  Rat   550 FMLLAYLAVSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQ-----QGS 609

  Fly   398 ALARLPRSWRHRFIAAHWLWA-SIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEG-------- 453
            .:  :||:...|.::..| || ::.:..||.:.|...:.:|....|..|.|.|..:.        
  Rat   610 EI--MPRALSTRCVSGVW-WAFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIH 671

  Fly   454 -------FQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVL-----NVLTRNRNRKIFAVA 506
                   ||.......||:                      |:.:     :|..::....|..|.
  Rat   672 AGSTMTFFQNSRYQTYQRM----------------------WNYMQSKQPSVFVKSTEEGIARVL 714

  Fly   507 NQDVTLSFLHSSAHPNAFH--------VVKQPVNVEYAGMYMPKHSFLYEKMDDDIRRLDASGFI 563
            |.  ..:||..|. .|.:|        .:...::.:..|:.||..|...:::...|.:|..:..:
  Rat   715 NS--RYAFLLEST-MNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNRL 776

  Fly   564 HAWRRASFASVH-RKEQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFA 612
            ...:|..:.... .||:.|..  :.:....:.||::|     |:.||:.|
  Rat   777 EILKRKWWEGGRCPKEEDHRA--KGLGMENIGGIFVV-----LICGLIIA 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 29/136 (21%)
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616 36/197 (18%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:389745 82/418 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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