DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and glr-1

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_498887.2 Gene:glr-1 / 176204 WormBaseID:WBGene00001612 Length:962 Species:Caenorhabditis elegans


Alignment Length:437 Identity:77/437 - (17%)
Similarity:155/437 - (35%) Gaps:118/437 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 GFEIQLVEHLARRM---NFSLELVNIALLRPNAYRLAEGSSEGPIEKLLQRNVNISMGYFRKTAR 316
            ||.|.|::.||.::   |:.::|...|     ..:.|:||.:|.|.:||....:..:........
 Worm   494 GFCIDLLKLLADKIEEFNYEIKLGTKA-----GSKQADGSWDGMIGELLSGRAHAVVASLTINQE 553

  Fly   317 RNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWMLLLLALLIHLGIHL-------- 373
            |.:::.....:.:..:..:::....:..|:...:.|....:||.::.|   ::|:.:        
 Worm   554 RERVVDFSKPFMTTGISIMIKKPDKQEFSVFSFMQPLSTEIWMYIIFA---YIGVSVVIFLVSRF 615

  Fly   374 -PSARRGNEEDGGGGLQV-------------VALLLGAALARLPRSWRHRFIAAHWLWASIPLRI 424
             |...| .||...||..:             :|..:......||||...|..::.|.:.::.:..
 Worm   616 SPYEWR-VEETSRGGFTISNDFSVYNCLWFTLAAFMQQGTDILPRSISGRIASSAWWFFTMIIVS 679

  Fly   425 SYQSLLFHLIRLQLYNTPSFSLDQLLAE-----GFQGICTANTQRLLLEMPQLARDPDSIQSVDT 484
            ||.:.|...:.|:....|..|::.|..:     |.||                      ..|..:
 Worm   680 SYTANLAAFLTLEKMQAPIESVEDLAKQSKIKYGIQG----------------------GGSTAS 722

  Fly   485 PFDWDVLNVLTRNRNRKIFAVANQDVTLSFLHSSAHPNAFHVVKQPVNVEYAGMYMPKHSFLYE- 548
            .|.:..:.:..|              ...::.|...|  ..|......:|....:..:::||.| 
 Worm   723 FFKYSSVQIYQR--------------MWRYMESQVPP--VFVASYAEGIERVRSHKGRYAFLLEA 771

  Fly   549 ---------KMDDDIR---RLDASGFIHA------WR----RASFASVHRKEQVHMTSRRY---- 587
                     |..|.::   .|::.|:..|      |:    .|..|...|.|...:.::.:    
 Worm   772 TANEYENTRKPCDTMKVGANLNSIGYGIATPFGSDWKDHINLAILALQERGELKKLENKWWYDRG 836

  Fly   588 --------------INHAKLSGIYMVMAGLYLLAGLLFAGEVLLRQR 620
                          :|.:|::||:.::.|..:::.|...||.|.|.|
 Worm   837 QCDAGITVDGSSASLNLSKVAGIFYILMGGMVISMLAALGEFLYRSR 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 19/105 (18%)
glr-1NP_498887.2 PBP1_iGluR_AMPA 10..439 CDD:107375
ANF_receptor 44..417 CDD:279440
Periplasmic_Binding_Protein_Type_2 457..832 CDD:304360 66/384 (17%)
Lig_chan 593..867 CDD:278489 52/315 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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