DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and glr-3

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_492017.3 Gene:glr-3 / 172449 WormBaseID:WBGene00001614 Length:836 Species:Caenorhabditis elegans


Alignment Length:451 Identity:86/451 - (19%)
Similarity:167/451 - (37%) Gaps:104/451 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 DKLSQMHGCPLTVLTWHQPPFVELVWDPKHNRSRGS--GFEIQLVEHLARRMNFSLELVNIALLR 281
            :||: :.|..|.:..:.:.|||.:.       |.||  |:.|.|:..:|..:.|:   ..|..:|
 Worm   394 EKLT-LEGKHLKISVYLEAPFVMIT-------SNGSYEGYCIDLLHKIANILKFT---YTIQKVR 447

  Fly   282 PNAY--RLAEGSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIG 344
            .|||  :.:.|...|.:.:|.:.:.::::.....:..|::::...:.|....:..:.:..|.|..
 Worm   448 DNAYGSKESNGKWSGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYMHLGISILFKKPRIRDS 512

  Fly   345 SLALLVFPFELSVWMLLLLA-LLIHLGIHL-----PSARRGNEEDGGGGLQV------------- 390
            .....:.|....||::...: .::.:.|.:     |..:...:||.|....|             
 Worm   513 DWFKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNGQYKPVDNQFSLRNSFWFT 577

  Fly   391 VALLLGAALARLPRSWRHRFIAAHWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAE--- 452
            |..|:.......||:...|.:...|.:.::.|..||.:.|..::..:...||..:.|.|.|:   
 Worm   578 VCSLMQQGSELCPRAASTRLLTGIWWFFALILISSYTANLAAVLTTRRMETPIENADDLAAQTKI 642

  Fly   453 --GFQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVLN----VLTRNRNRKIFAVANQDVT 511
              |..|  ..:|.....|        ..|::.:..  |.:::    :..::....|..|.:.|  
 Worm   643 KYGTLG--RGSTMSFFNE--------SKIETYERM--WQLMSSSPGLFVQSSKEGIARVKSSD-- 693

  Fly   512 LSFLHSSAHPNAFHVVKQPVNVEYA-------------------GMYMPKHSFLYEKMDDDIRRL 557
            .::|..|:            .:|||                   |:.:||.|...|.:...|.||
 Worm   694 YAYLMESS------------MLEYAVERDCELMQIGGLIDQKGYGIGLPKGSPYRELISTAILRL 746

  Fly   558 DASGFIHA-----WRRASFA--SVHRKEQVHMTSRRYINHAKLSGIYMVM-AGLYLLAGLL 610
            .....:..     |:..|..  ...||:|....|        :.||:::: .||.|.|.|:
 Worm   747 QEKTELTELKEKWWKDKSVVCEQPKRKDQDDGES--------IGGIFIILVVGLVLTAVLV 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 24/130 (18%)
glr-3NP_492017.3 PBP1_iGluR_non_NMDA-like 21..385 CDD:380591
Periplasmic_Binding_Protein_Type_2 401..761 CDD:419667 70/395 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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