DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and Grin2c

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:767 Identity:125/767 - (16%)
Similarity:243/767 - (31%) Gaps:271/767 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 VIENVLAQLSTTLVVTISTRHLGTAHWFE---------YMMNILMDSWRMVAVQLLRIRPDLVVN 104
            |:..||.:...:....|::.|.|.|.:.|         |:      |||::.|..|.:.|.   .
Mouse   214 VLFKVLEEYDWSAFAVITSLHPGHALFLEGVRAVADASYL------SWRLLDVLTLELGPG---G 269

  Fly   105 PVPGRKRVSLLMVDSYQGLLDTNITASNANFDDPDYYFIFLQARDHLIPKELQLILDHCLAHFWL 169
            |   |.|...|:..     :|..:..:..:.::.:..|........:.|           .|.||
Mouse   270 P---RARTQRLLRQ-----VDAPVLVAYCSREEAEVLFAEAAQAGLVGP-----------GHVWL 315

  Fly   170 HCNVMIQTAQ-----------------------------VEVLV---------YTYYPYTADACQ 196
            ..|:.:.:..                             |.:|.         |...|..|..| 
Mouse   316 VPNLALGSTDAPPAAFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQYGTLPAPAGDC- 379

  Fly   197 KAYPIPVN-------------TFDGRKWKAS-------------QMFPDKLSQM-----HGC--- 227
            :::|.||:             |::||.:..|             .:...:|.:|     ||.   
Mouse   380 RSHPGPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVQPTMVVIALNRHRLWEMVGRWDHGVLYM 444

  Fly   228 -------------------PLTVLTWHQPPFVELVWDP------------------KHNRSRG-- 253
                               .|||.|..:.||| :|..|                  .|..|.|  
Mouse   445 KYPVWPRYSTSLQPVVDSRHLTVATLEERPFV-IVESPDPGTGGCVPNTVPCRRQSNHTFSSGDI 508

  Fly   254 --------SGFEIQLVEHLARRMNFSLELVNIALLRPNAYRLAEGSS--------EGPIEKLLQR 302
                    .||.|.:::.||:.:.||.:|          |.:..|..        .|.|.::..:
Mouse   509 TPYTKLCCKGFCIDILKKLAKVVKFSYDL----------YLVTNGKHGKRVRGVWNGMIGEVYYK 563

  Fly   303 NVNISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWMLLLLALLI 367
            ..::::|.......|::::...:.:....:..::......:...|.|. |:..:||:::.:..|.
Mouse   564 RADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSNGTVSPSAFLE-PYSPAVWVMMFVMCLT 627

  Fly   368 HLGIHL-------PSARRGN----EEDGGGGLQV-------VALLLGAAL-ARLPRSWRHRFIAA 413
            .:.|.:       |.:...|    ::.||....:       .||:...:: ...||....:.:..
Mouse   628 VVAITVFMFEYFSPVSYNQNLTKGKKSGGPSFTIGKSVWLLWALVFNNSVPIENPRGTTSKIMVL 692

  Fly   414 HWLWASIPLRISYQSLLFHLIRLQLYNTPSFSLDQLLAEGFQGICTANTQRLLLEMPQLARDPDS 478
            .|.:.::....||.:           |..:|.:.:...:...|:.....||     ||....|..
Mouse   693 VWAFFAVIFLASYTA-----------NLAAFMIQEQYIDTVSGLSDKKFQR-----PQDQYPPFR 741

  Fly   479 IQSVDTPFDWDVLNVLTRNRNRKIFAVANQDVTLSFLHSSAHPNAFHVVKQPVNVEYAGMYMPKH 543
            ..:|  |......|:.:..|:.....|.....::....:|....|.||.::            ..
Mouse   742 FGTV--PNGSTERNIRSNYRDMHTHMVKFNQRSVEDALTSLKMGARHVSRK------------LD 792

  Fly   544 SFLYEK--------MDDDIRRLD-ASGFIHA-------------WRRASFASV------------ 574
            :|:|:.        .|:..:.:. .||.:.|             |:||...::            
Mouse   793 AFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKL 857

  Fly   575 ---------HRKEQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFAGEVLL 617
                     |.::...|:|:..|::  ::|::.::.....||.|:||.|.|:
Mouse   858 ETVWLSGICHNEKNEVMSSKLDIDN--MAGVFYMLLVAMGLALLVFAWEHLV 907

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 27/162 (17%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601 43/260 (17%)
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 70/447 (16%)
NMDAR2_C 905..>980 CDD:371139 1/3 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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