DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7f and GRIN3B

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:505 Identity:105/505 - (20%)
Similarity:164/505 - (32%) Gaps:165/505 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 KASQMFPDKLSQMHGCPLTVLTWHQPPFV--------------ELVWDPKHNRS----------- 251
            :.:|::|         .|.|:|..:.|||              :|..||..|.|           
Human   409 QGAQVWP---------KLRVVTLLEHPFVFARDPDEDGQCPAGQLCLDPGTNDSATLDALFAALA 464

  Fly   252 RGS----------GFEIQLVEHLARRMNFSLELVNIALLRPNAY-RLAEGSSEGPIEKLLQRNVN 305
            .||          |:.|.|:|.||....|..||.   |:....| .|.:|...|.:..||....:
Human   465 NGSAPRALRKCCYGYCIDLLERLAEDTPFDFELY---LVGDGKYGALRDGRWTGLVGDLLAGRAH 526

  Fly   306 ISMGYFRKTARRNQLLTTPMSYYSANLVAVLQLERYRIGSLALLVFPFELSVWMLLLLALLIHLG 370
            :::..|...:.|:|::.....::|.:| .::...|.....:...::|...|.|:.:..||     
Human   527 MAVTSFSINSARSQVVDFTSPFFSTSL-GIMVRARDTASPIGAFMWPLHWSTWLGVFAAL----- 585

  Fly   371 IHLPSARRGNEEDGGGGLQVVALLLGAALARLPRS----WRHRFIAAHWLWASIPLRISYQSLLF 431
             ||                 .||.|.....|.|..    .|:|.....:   |..|.:.| ::||
Human   586 -HL-----------------TALFLTVYEWRSPYGLTPRGRNRSTVFSY---SSALNLCY-AILF 628

  Fly   432 HLIRLQLYNTPSFSLDQLLAEGFQGIC-------TANTQRLLL---EMPQLA--RDP---DSIQS 481
            .  |.....||.....:||...:...|       |||...:::   ...:|:  .||   ...|.
Human   629 R--RTVSSKTPKCPTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPAQG 691

  Fly   482 VDTPFDWDVLNVLTRNRNRKIFAVANQDVTLSFLHSSAHP----------------------NAF 524
            ......|:              :.|...:..||....||.                      |||
Human   692 FRFGTVWE--------------SSAEAYIKKSFPDMHAHMRRHSAPTTPRGVAMLTSDPPKLNAF 742

  Fly   525 HV-------------------VKQPVNVEYAGMYMPKHSFLYEKMDDDIRRLDASGFIHAWRRAS 570
            .:                   |.:|..:|..|:.:|::|.|...:.:.|.|..:||||.......
Human   743 IMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKW 807

  Fly   571 FASV---HRKEQVHMTSRRYINHAKLSGIYMVMAGLYLLAGLLFAGEVLL 617
            :..|   .|...|..|.:..|.|         .|||::|. .|..|..||
Human   808 YKMVPCGKRVFAVTETLQMSIYH---------FAGLFVLL-CLGLGSALL 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 36/162 (22%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 90/448 (20%)
Lig_chan 576..842 CDD:278489 64/318 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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