DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7f and Grik4

DIOPT Version :9

Sequence 1:NP_001138177.1 Gene:Ir7f / 7354418 FlyBaseID:FBgn0259188 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:527 Identity:97/527 - (18%)
Similarity:186/527 - (35%) Gaps:124/527 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 AHFWLH-CNVMIQTAQVEVLVYT-YYPYTADACQKAYPIPVNTFDGR------KWKA-------S 214
            |..|.| .::|.....||:...| :..:.:...:..|.:.:..|...      :|..       |
Mouse   338 AQIWQHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALKILQFTRNGFQQIGQWHVAEGLSMDS 402

  Fly   215 QMFPDKLS-QMHGCPLTVLTWHQPPFVELVWDPKHNRSRGS----GFEIQLVEHLAR--RMNFSL 272
            :::...:| .:....|.|.|..:.|:  |:....|....|:    ||.:.:::.||.  |.|:.:
Mouse   403 RLYASNISDSLFNTTLVVTTILENPY--LMLKGNHQEMEGNDRYEGFCVDMLKELAEILRFNYKI 465

  Fly   273 ELVNIALLRPNAYRL--AEGSSEGPIEKLLQRNVNISMGYFRKTARRNQLLTTPMSYYSANLVAV 335
            .||.     ...|.:  |.|:..|.:.:|:.|..::::.....||.|.:::.....:.:..:..:
Mouse   466 RLVG-----DGVYGVPEANGTWTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISIL 525

  Fly   336 LQLERYRIGSLALLVFPFELSVWMLLLLALLIHLGIHLPSARRGNEE--------DGGGGLQVVA 392
            .::...|.......:.||...||:.:|||.|....:....||....|        .|...|.|..
Mouse   526 YRVHMGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYSPHPCAQGRCNLLVNQ 590

  Fly   393 LLLGAAL------------ARLPRSWRHRFIAAHWLWA-SIPLRISYQSLLFHLIRLQLYNTPSF 444
            ..||.:|            ...||:...|.::..| || ::.:..||.:.|...:.:|....|..
Mouse   591 YSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVW-WAFTLIIISSYTANLAAFLTVQRMEVPIE 654

  Fly   445 SLDQLLAEG---------------FQGICTANTQRLLLEMPQLARDPDSIQSVDTPFDWDVLNVL 494
            |:|.|..:.               ||.......||:                      |:.:   
Mouse   655 SVDDLADQTAIEYGTIHGGSSMTFFQNSRYQTYQRM----------------------WNYM--- 694

  Fly   495 TRNRNRKIFAVANQDVTLSFLHSSAHPNAFHVVKQPVNVEYA------------------GMYMP 541
             .::...:|..:.::.....|:|    |...:::..:|..|.                  |:.||
Mouse   695 -YSKQPSVFVKSTEEGIARVLNS----NYAFLLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMP 754

  Fly   542 KHSFLYEKMDDDIRRLDASGFIHAWRRASF-ASVHRKEQVHMTSRRYINHAKLSGIYMVMAGLYL 605
            ..|...::.|..|.:|..:..:...:|..: .....||:.|..  :.:....:.||::|     |
Mouse   755 VGSVFRDEFDLAILQLQENNRLEILKRKWWEGGKCPKEEDHRA--KGLGMENIGGIFVV-----L 812

  Fly   606 LAGLLFA 612
            :.||:.|
Mouse   813 ICGLIVA 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7fNP_001138177.1 Periplasmic_Binding_Protein_Type_2 231..>358 CDD:304360 26/134 (19%)
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:385651 10/63 (16%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 75/407 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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